RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TRBV2A0A0J9YWF9 115 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 FAM90A22PA8MWA6 464 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 ODF3BA8MYP8 253 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 INMTO95050 263 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 HAND1O96004 215 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 MT-ND2P03891 347 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 ZNF728P0DKX0 622 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 DBTP11182 482 aaKnown RBP12.96□□□□□ -0.33
CLN3-264ENST00000637985 PIPP12273 146 aaPredicted RBP12.96□□□□□ -0.33
CLN3-264ENST00000637985 PEX2P28328 305 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 EDDM3BP56851 147 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 ZNF91Q05481 1191 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 ALKBH1Q13686 389 aaKnown RBP12.96□□□□□ -0.33
CLN3-264ENST00000637985 ZNF146Q15072 292 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 FAM58AQ8N1B3 248 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 SYS1Q8N2H4 156 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 OR13D1Q8NGV5 346 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 RHOXF1Q8NHV9 184 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 C4orf36Q96KX1 117 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 OPALINQ96PE5 141 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 P2RX4Q99571 388 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 ALG8Q9BVK2 526 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 NEK6Q9HC98 313 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 GLS2Q9UI32 602 aa12.96□□□□□ -0.33
CLN3-264ENST00000637985 LOC100130705A0A1B0GUX0 176 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 hADV38S2A0JD32 116 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 TMEM82A0PJX8 343 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 OR4C45A6NMZ5 311 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 EBAG9O00559 213 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 FADS2O95864 444 aaKnown RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 ARG1P05089 322 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 OCM2P0CE71 109 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 OCMP0CE72 109 aaPredicted RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 JUNBP17275 347 aaPredicted RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 BCL3P20749 454 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 MYCNOSP40205 109 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 NPBWR2P48146 333 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 POU3F4P49335 361 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 RAB40BQ12829 278 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 MRPL28Q13084 256 aaKnown RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 PDZK1IP1Q13113 114 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 SPIN3Q5JUX0 258 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 ZNF782Q6ZMW2 699 aaPredicted RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 ZBTB49Q6ZSB9 765 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 LHFPL3Q86UP9 236 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 SBSPONQ8IVN8 264 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 PQLC1Q8N2U9 271 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 ZNF676Q8N7Q3 588 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 OR13C3Q8NGS6 347 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 ZNF714Q96N38 554 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 CITED4Q96RK1 184 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 SLC29A1Q99808 456 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 RHOFQ9HBH0 211 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 RBFOX1Q9NWB1 397 aaKnown RBP12.95□□□□□ -0.34
CLN3-264ENST00000637985 AASSQ9UDR5 926 aa12.95□□□□□ -0.34
CLN3-264ENST00000637985 IGHA1P01876 353 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 LPLP06858 475 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 IGHV1-8P0DP01 117 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 GRK1Q15835 563 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 ZNF626Q68DY1 528 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 OR11H6Q8NGC7 330 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 OR51A4Q8NGJ6 313 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 HAVCR2Q8TDQ0 301 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 ZCCHC4Q9H5U6 513 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 MRPS18AQ9NVS2 196 aaKnown RBP12.94□□□□□ -0.34
CLN3-264ENST00000637985 FAM118AQ9NWS6 357 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 IL36RNQ9UBH0 155 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 RPL36Q9Y3U8 105 aaKnown RBP12.94□□□□□ -0.34
CLN3-264ENST00000637985 LINC00312Q9Y6C7 94 aa12.94□□□□□ -0.34
CLN3-264ENST00000637985 TMEM212A6NML5 194 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 MGST3O14880 152 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 PRKACAP17612 351 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 GABRR1P24046 479 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 ERP29P30040 261 aaKnown RBP12.93□□□□□ -0.34
CLN3-264ENST00000637985 SLC6A1P30531 599 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 GP2P55259 537 aaKnown RBP12.93□□□□□ -0.34
CLN3-264ENST00000637985 RPL23AP62750 156 aaKnown RBP12.93□□□□□ -0.34
CLN3-264ENST00000637985 EDDM3AQ14507 147 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 C8orf86Q6ZUL3 223 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 C16orf82Q7Z2V1 217 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 SAXO1Q8IYX7 474 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 OSR2Q8N2R0 312 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 OR52N4Q8NGI2 321 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 OR5D14Q8NGL3 314 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 OR10AC1Q8NH08 325 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 HMG20AQ9NP66 347 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 ERVK13-1Q9NX77 482 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 MYRFQ9Y2G1 1151 aa12.93□□□□□ -0.34
CLN3-264ENST00000637985 H3BUI4 141 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 SH2D1BO14796 132 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 PSPNO60542 156 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 KDM4BO94953 1096 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 ECI1P42126 302 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 LUMP51884 338 aaPredicted RBP12.92□□□□□ -0.34
CLN3-264ENST00000637985 LPCAT4Q643R3 524 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 C18orf65Q6ZTR6 163 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 TCF23Q7RTU1 214 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 OR2W3Q7Z3T1 314 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 SERPINA12Q8IW75 414 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 OR13C9Q8NGT0 318 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms