RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SMIM21Q3B7S5 101 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF808Q8N4W9 903 aaPredicted RBP13.47□□□□□ -0.25
CPSF1-213ENST00000620219 Q96M66 194 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF224Q9NZL3 707 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 ATPIF1Q9UII2 106 aa13.47□□□□□ -0.25
CPSF1-213ENST00000620219 IGHV2OR16-5A0A0B4J2B6 119 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 KANTRA0A1W2PQU2 76 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 WNT9BO14905 357 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 SULT1A3P0DMM9 295 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 SULT1A4P0DMN0 295 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ZCCHC24Q8N2G6 241 aaKnown RBP13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ARRDC1Q8N5I2 433 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ARPC4-TTLL3A0A0A6YYG9 625 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 IGKV1-12A0A0C4DH73 117 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 RFPL4AA6NLU0 287 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 F5H0A9 414 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-213ENST00000620219 RFPL4AL1F8VTS6 287 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 IGKV1D-12P01611 117 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 HOXD4P09016 255 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ZNF474Q6S9Z5 364 aaPredicted RBP13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ALKAL2Q6UX46 152 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 UNQ6494/PRO21346Q6UXR6 183 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 OR13C8Q8NGS7 320 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 PLSCR4Q9NRQ2 329 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 PPP1R3CQ9UQK1 317 aa13.46□□□□□ -0.25
CPSF1-213ENST00000620219 ZP1P60852 638 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 MPPED2Q15777 294 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 AADACL3Q5VUY0 350 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 CDH26Q8IXH8 852 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 DCUN1D4Q92564 292 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 KCNJ16Q9NPI9 418 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 MTCH1Q9NZJ7 389 aa13.46□□□□□ -0.26
CPSF1-213ENST00000620219 DEFB108AA8MXU0 73 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 SSX5O60225 188 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 NAT2P11245 290 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 ZNF154Q13106 437 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 ZNF546Q86UE3 836 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 IGHV3-43A0A0B4J1X8 118 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 TFF1P04155 84 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 IGHV3-43DP0DP04 118 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 TIMM23BQ5SRD1 257 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 SUMF2Q8NBJ7 301 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 OR2V2Q96R30 315 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 EGLN1Q9GZT9 426 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 OR8U9P0C7N5 309 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 TBPP20226 339 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 VAMP2P63027 116 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 OR8U1Q8NH10 309 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 RTN4IP1Q8WWV3 396 aaPredicted RBP13.45□□□□□ -0.26
CPSF1-213ENST00000620219 OR5P3Q8WZ94 311 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 NARS2Q96I59 477 aaKnown RBP13.45□□□□□ -0.26
CPSF1-213ENST00000620219 F8VVB4 439 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 F8VWA3 439 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 KCNAB3O43448 404 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 CRHP06850 196 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 RAG2P55895 527 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 SPERTQ8NA61 448 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 PXT1Q8NFP0 134 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 OR8G5Q8NG78 346 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 HPSE2Q8WWQ2 592 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 GPHA2Q96T91 129 aa13.45□□□□□ -0.26
CPSF1-213ENST00000620219 IGHV1-18A0A0C4DH31 117 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 RGS11O94810 467 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 SERPINF1P36955 418 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 IGSF11Q5DX21 431 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 OR10V1Q8NGI7 309 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 MRGPRDQ8TDS7 321 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 KIRREL1Q96J84 757 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 CRIM1Q9NZV1 1036 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 FAM215AQ9Y5M1 114 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 TUBAL3A6NHL2 446 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 LDLRAD4O15165 306 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 ADAP1O75689 374 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 CEACAM4O75871 244 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 IAH1Q2TAA2 248 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-213ENST00000620219 LRP11Q86VZ4 500 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 RRNAD1Q96FB5 475 aaKnown RBP13.44□□□□□ -0.26
CPSF1-213ENST00000620219 EDARQ9UNE0 448 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 A0A0G2JNJ9 132 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 HOXB1P14653 301 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-213ENST00000620219 RCC1P18754 421 aaPredicted RBP13.44□□□□□ -0.26
CPSF1-213ENST00000620219 FGF12P61328 243 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 AESQ08117 197 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 Q9UFV3 132 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 WASF3Q9UPY6 502 aa13.44□□□□□ -0.26
CPSF1-213ENST00000620219 SNRPGP15A8MWD9 76 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 MFNGO00587 321 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 TNFSF13O75888 250 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 FAM201AQ5SY85 155 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 LYG2Q86SG7 212 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 ITLN1Q8WWA0 313 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 SMIM3Q9BZL3 60 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 SLA2Q9H6Q3 261 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 NARFLQ9H6Q4 476 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 ERRFI1Q9UJM3 462 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 LRP5LA4QPB2 252 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 NKX2-6A6NCS4 301 aa13.43□□□□□ -0.26
CPSF1-213ENST00000620219 MBD3L4A6NDZ8 208 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 MBD3L3A6NE82 208 aaPredicted RBP13.43□□□□□ -0.26
CPSF1-213ENST00000620219 WIPF3A6NGB9 483 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms