RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KISS1Q15726 138 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF542PQ5EBM4 170 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 SLC22A18ASQ8N1D0 253 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM170AQ8WVE7 144 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 C11orf40Q8WZ69 217 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 OR1E3Q8WZA6 343 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 KLHDC3Q9BQ90 382 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 NXF5Q9H1B4 397 aaKnown RBP9.42□□□□□ -0.9
UPF3A-212ENST00000619079 C11orf1Q9H5F2 150 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 SLC2A9Q9NRM0 540 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 GPR173Q9NS66 373 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 PLEKHJ1Q9NW61 149 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 GAB2Q9UQC2 676 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 CLDN16Q9Y5I7 305 aa9.42□□□□□ -0.9
UPF3A-212ENST00000619079 IGKV1D-8A0A087WSZ0 117 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 A0A1W2PR77 199 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 IGSF23A1L1A6 192 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 FAM24AA6NFZ4 105 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF850A8MQ14 1090 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 PGA3P0DJD8 388 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 DTYMKP23919 212 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 IL12BP29460 328 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 NKX2-1P43699 371 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF66Q6ZN08 573 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 P4HA3Q7Z4N8 544 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 CARFQ8N187 725 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM252Q8N6L7 170 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 OR5C1Q8NGR4 320 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 OR2AJ1Q8NGZ0 328 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 OR5B12Q96R08 314 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 HRASLS2Q9NWW9 162 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 GNG13Q9P2W3 67 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 MCTS1Q9ULC4 181 aaKnown RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 KNL1Q8NG31 2342 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 C17orf105B2RV13 164 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 TRDCB7Z8K6 153 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 ALG1L2C9J202 215 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 ASCL1P50553 236 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 UCP3P55916 312 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 SLC37A1P57057 533 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 PMS2P11Q13670 270 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 PEAR1Q5VY43 1037 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 ZNF880Q6PDB4 577 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 SLC23A3Q6PIS1 610 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 BTNL3Q6UXE8 466 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 FAM185AQ8N0U4 392 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 OR8B12Q8NGG6 310 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 OR10S1Q8NGN2 331 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 NPRL2Q8WTW4 380 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 REEP6Q96HR9 211 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 FAM71F1Q96KD3 344 aaPredicted RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 POLR1DQ9Y2S0 133 aa9.41□□□□□ -0.9
UPF3A-212ENST00000619079 MRPS18CQ9Y3D5 142 aaKnown RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 PTRH2Q9Y3E5 179 aaKnown RBP9.41□□□□□ -0.9
UPF3A-212ENST00000619079 SPTY2D1-AS1A0A0U1RR47 76 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 IFNA1P01562 189 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 OR4A8P0C604 315 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 HLA-DOBP13765 273 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 MSX1P28360 303 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 IDH3GP51553 393 aaPredicted RBP9.4□□□□□ -0.9
UPF3A-212ENST00000619079 NXPH1P58417 271 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 TAS2R30P59541 319 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 TEX38Q6PEX7 206 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 OR5L1Q8NGL2 311 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 PTPMT1Q8WUK0 201 aaPredicted RBP9.4□□□□□ -0.9
UPF3A-212ENST00000619079 TMEM171Q8WVE6 324 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 TSACCQ96A04 125 aaPredicted RBP9.4□□□□□ -0.9
UPF3A-212ENST00000619079 CALHM2Q9HA72 323 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 FKBP11Q9NYL4 201 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 RNF150Q9ULK6 438 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 CEP192Q8TEP8 1941 aa9.4□□□□□ -0.9
UPF3A-212ENST00000619079 PHF1O43189 567 aaPredicted RBP9.4□□□□□ -0.91
UPF3A-212ENST00000619079 PFN1P07737 140 aaKnown RBP9.4□□□□□ -0.91
UPF3A-212ENST00000619079 CTSEP14091 401 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 OR10J1P30954 320 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF121P58317 390 aaPredicted RBP9.4□□□□□ -0.91
UPF3A-212ENST00000619079 DCAF7P61962 342 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 ZFP36L1Q07352 338 aaKnown RBP9.4□□□□□ -0.91
UPF3A-212ENST00000619079 PRDX4Q13162 271 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 THEM4Q5T1C6 240 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF774Q6NX45 483 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 H1FNTQ75WM6 255 aaPredicted RBP9.4□□□□□ -0.91
UPF3A-212ENST00000619079 ZNF100Q8IYN0 542 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 TMEM123Q8N131 208 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 PRR18Q8N4B5 295 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 ATP5SQ99766 215 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 AGMATQ9BSE5 352 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 Q9N2K0 584 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 NAT8Q9UHE5 227 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 IL17BQ9UHF5 180 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 LAMP3Q9UQV4 416 aa9.4□□□□□ -0.91
UPF3A-212ENST00000619079 IGKV1-9A0A0C4DH69 117 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 LNP1A1A4G5 178 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 B4E171 279 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 MS4A18H0YCH9 400 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 MSTNO14793 375 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 SOX15O60248 233 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 PRKNO60260 465 aaPredicted RBP9.39□□□□□ -0.91
UPF3A-212ENST00000619079 CER1O95813 267 aa9.39□□□□□ -0.91
UPF3A-212ENST00000619079 SCGB1D1O95968 90 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms