RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 CSN2P05814 226 aa19.82■□□□□ 0.76
PTPRF-216ENST00000617451 ZNF20P17024 532 aa19.82■□□□□ 0.76
PTPRF-216ENST00000617451 GABARAPL3Q9BY60 117 aa19.82■□□□□ 0.76
PTPRF-216ENST00000617451 PCDHGB5Q9Y5G0 923 aa19.82■□□□□ 0.76
PTPRF-216ENST00000617451 RYR3Q15413 4870 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 M0QZK8 103 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 MT-ND2P03891 347 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 PTGFRP43088 359 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 PRRX1P54821 245 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 EGFEM1PQ0D2K5 195 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 DEFB121Q5J5C9 76 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 KHDC1LQ5JSQ8 128 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 CCDC144NLQ6NUI1 221 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 FDX2Q6P4F2 183 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 RNF144BQ7Z419 303 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 AMIGO2Q86SJ2 522 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 OSR2Q8N2R0 312 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 OR4D6Q8NGJ1 314 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 COQ2Q96H96 371 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 RHOFQ9HBH0 211 aa19.81■□□□□ 0.76
PTPRF-216ENST00000617451 OOSP1A8MZH6 123 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 MNDAP41218 407 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 NANOS3P60323 173 aaKnown RBP19.8■□□□□ 0.76
PTPRF-216ENST00000617451 SCN1BQ07699 218 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 C17orf58Q2M2W7 97 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 C9orf152Q5JTZ5 239 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 KRBOX4Q5JUW0 171 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 UTF1Q5T230 341 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 C11orf87Q6NUJ2 197 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 Q6P435 159 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 KCTD20Q7Z5Y7 419 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 LINC00482Q8N8I6 264 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 SPACA5Q96QH8 159 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 AP4S1Q9Y587 144 aa19.8■□□□□ 0.76
PTPRF-216ENST00000617451 OCM2P0CE71 109 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 OCMP0CE72 109 aaPredicted RBP19.79■□□□□ 0.76
PTPRF-216ENST00000617451 ZNF44P15621 663 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 OR3A4PP47883 348 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 SAXO1Q8IYX7 474 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 CHST4Q8NCG5 386 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 OR51A4Q8NGJ6 313 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 OR5D18Q8NGL1 313 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 OR10AC1Q8NH08 325 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 RIBC2Q9H4K1 309 aa19.79■□□□□ 0.76
PTPRF-216ENST00000617451 ZNF729A6NN14 1252 aaPredicted RBP19.78■□□□□ 0.76
PTPRF-216ENST00000617451 SLC33A1O00400 549 aaPredicted RBP19.78■□□□□ 0.76
PTPRF-216ENST00000617451 FAM106CPP0CH98 169 aa19.78■□□□□ 0.76
PTPRF-216ENST00000617451 HOXD3P31249 432 aaPredicted RBP19.78■□□□□ 0.76
PTPRF-216ENST00000617451 CCR9P51686 369 aa19.78■□□□□ 0.76
PTPRF-216ENST00000617451 RBM39Q14498 530 aaKnown RBP19.78■□□□□ 0.76
PTPRF-216ENST00000617451 OR13C9Q8NGT0 318 aa19.78■□□□□ 0.76
PTPRF-216ENST00000617451 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP19.78■□□□□ 0.763e-7■■■■■ 33.1
PTPRF-216ENST00000617451 ING3Q9NXR8 418 aa19.78■□□□□ 0.76
PTPRF-216ENST00000617451 PSMB11A5LHX3 300 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A18PA6NE21 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A16PA6NEW6 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A20PA6NIJ5 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A9PA6NNJ1 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A12PA8MX19 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A5PA8MXJ8 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 J3QRE1 110 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 SLC16A6O15403 523 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A15PP0C7V4 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A13PP0C7W8 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A14PP0C7W9 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 FAM90A24PP0C7X0 464 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 ATXN7L3Q14CW9 347 aaPredicted RBP19.77■□□□□ 0.76
PTPRF-216ENST00000617451 ETV3LQ6ZN32 361 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 THNSL2Q86YJ6 484 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 MRPL41Q8IXM3 137 aaKnown RBP19.77■□□□□ 0.76
PTPRF-216ENST00000617451 OR13C3Q8NGS6 347 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 OR9G1Q8NH87 305 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 PPIL3Q9H2H8 161 aaKnown RBP19.77■□□□□ 0.76
PTPRF-216ENST00000617451 NEK6Q9HC98 313 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 OR6C3Q9NZP0 311 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 MOB4Q9Y3A3 225 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 HSPE1-MOB4S4R3N1 261 aa19.77■□□□□ 0.76
PTPRF-216ENST00000617451 KBTBD11-OT1A0A1B0GTJ5 212 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 DEGS1O15121 323 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 HTR1AP08908 422 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 CGB3P0DN86 165 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 CGB7P0DN87 165 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 FCGR1AP12314 374 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 NFYBP25208 207 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 CDK5R1Q15078 307 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 TRUB1Q8WWH5 349 aaKnown RBP19.76■□□□□ 0.75
PTPRF-216ENST00000617451 KIRREL1Q96J84 757 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 HRASLS5Q96KN8 279 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 GPR61Q9BZJ8 451 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 PCDHB16Q9NRJ7 776 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 OAZ3Q9UMX2 235 aa19.76■□□□□ 0.75
PTPRF-216ENST00000617451 DAPL1A0PJW8 107 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 OR4C45A6NMZ5 311 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 ZNF329Q86UD4 541 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 OR51T1Q8NGJ9 327 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 RPEQ96AT9 228 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 RNFT2Q96EX2 444 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 OSBPL10Q9BXB5 764 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 ZCCHC4Q9H5U6 513 aa19.75■□□□□ 0.75
PTPRF-216ENST00000617451 MYRFQ9Y2G1 1151 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms