RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MRPS24Q96EL2 167 aaKnown RBP13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 TBX15Q96SF7 602 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 PCGF1Q9BSM1 259 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 OR51E2Q9H255 320 aa13.62□□□□□ -0.23
CCDC28A-202ENST00000611852 TRAV24A0A0B4J272 114 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 MGST3O14880 152 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 GEMIN2O14893 280 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 UBBP0CG47 229 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 EDDM3BP56851 147 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 EDDM3AQ14507 147 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 CLVS1Q8IUQ0 354 aaPredicted RBP13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 CMTM4Q8IZR5 234 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 OR6M1Q8NGM8 313 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 SLC25A28Q96A46 364 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 POM121Q96HA1 1249 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 PPA2Q9H2U2 334 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 ZNF581Q9P0T4 197 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 RSL24D1Q9UHA3 163 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 SSR3Q9UNL2 185 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 CEPT1Q9Y6K0 416 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 V9GY05 133 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 DSCAML1Q8TD84 2053 aa13.61□□□□□ -0.23
CCDC28A-202ENST00000611852 SLC17A2O00624 439 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 CRTAPO75718 401 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 IGHV4-38-2P0DP08 117 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 MGMTP16455 207 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 GADD45AP24522 165 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 MYL9P24844 172 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 ERP29P30040 261 aaKnown RBP13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 PSMD7P51665 324 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 C1orf122Q6ZSJ8 110 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 LINC00596Q86U02 117 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 Q8N7P7 452 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 TPRX1Q8N7U7 411 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 CHCHD6Q9BRQ6 235 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 BANF2Q9H503 90 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 IFT22Q9H7X7 185 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 PLGRKTQ9HBL7 147 aa13.6□□□□□ -0.23
CCDC28A-202ENST00000611852 TRAV40A0A0B4J280 105 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 ZNF701M0R085 212 aaPredicted RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 M0R1W7 72 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 PDCD5O14737 125 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 OR7C1O76099 320 aaPredicted RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 CSN2P05814 226 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 VSIG8P0DPA2 414 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 MEF2CQ06413 473 aaPredicted RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 ZNF273Q14593 569 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 TAF9Q16594 264 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 MPV17LQ2QL34 196 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 PAN3Q58A45 887 aaKnown RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 VMO1Q7Z5L0 202 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 FAM46BQ96A09 425 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 SELENOIQ9C0D9 397 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 CST11Q9H112 138 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 NUP50Q9UKX7 468 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 IGHV3OR16-10A0A075B7F0 116 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 A0A1W2PPH5 198 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 HSPB6O14558 160 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 BPNT1O95861 308 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 CCL3L1P16619 93 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 EPHA1P21709 976 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 P2RX3P56373 397 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 OR10A3P58181 314 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 QRFPP83859 136 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 AESQ08117 197 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 ATXN7L3Q14CW9 347 aaPredicted RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 GPR107Q5VW38 600 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 OR10K2Q6IF99 312 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 METAP1DQ6UB28 335 aaPredicted RBP13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 TCF23Q7RTU1 214 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 C11orf42Q8N5U0 333 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 SUMF2Q8NBJ7 301 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 YIPF6Q96EC8 236 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 Q96M66 194 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 KCNK15Q9H427 330 aa13.59□□□□□ -0.23
CCDC28A-202ENST00000611852 CUBNO60494 3623 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 LOC100506127A0A0U1RQW1 187 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 CENPVL3A0A0U1RRI6 287 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 hADV38S2A0JD32 116 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 MEX3AA1L020 520 aaKnown RBP13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 RAB3BP20337 219 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 GLIPR1P48060 266 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 DLX6P56179 175 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 UNC119Q13432 240 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 P2RY14Q15391 338 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 RAB11BQ15907 218 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 CNPY1Q3B7I2 92 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 NR2C2APQ86WQ0 139 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 PRIMA1Q86XR5 153 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 BPIFB2Q8N4F0 458 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 KCNG3Q8TAE7 436 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 ISOC1Q96CN7 298 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 COQ2Q96H96 371 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 KCTD7Q96MP8 289 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 DPCDQ9BVM2 203 aaPredicted RBP13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 RNF167Q9H6Y7 350 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 METTL8Q9H825 291 aaKnown RBP13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 UNKLQ9H9P5 680 aaKnown RBP13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 SIRT7Q9NRC8 400 aa13.58□□□□□ -0.24
CCDC28A-202ENST00000611852 FUOMA2VDF0 154 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms