RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RAB7AP51149 207 aa5□□□□□ -1.61
CUX1-220ENST00000607092 CDK5Q00535 292 aa5□□□□□ -1.61
CUX1-220ENST00000607092 HLA-DRB5Q30154 266 aa5□□□□□ -1.61
CUX1-220ENST00000607092 CXorf66Q5JRM2 361 aaPredicted RBP5□□□□□ -1.61
CUX1-220ENST00000607092 TPTE2P1Q5T6R2 138 aa5□□□□□ -1.61
CUX1-220ENST00000607092 OGFRL1Q5TC84 451 aaPredicted RBP5□□□□□ -1.61
CUX1-220ENST00000607092 CYP2R1Q6VVX0 501 aa5□□□□□ -1.61
CUX1-220ENST00000607092 Q6ZSR3 168 aa5□□□□□ -1.61
CUX1-220ENST00000607092 SLC25A26Q70HW3 274 aa5□□□□□ -1.61
CUX1-220ENST00000607092 OR8H3Q8N146 312 aa5□□□□□ -1.61
CUX1-220ENST00000607092 FAM58AQ8N1B3 248 aa5□□□□□ -1.61
CUX1-220ENST00000607092 IQCF1Q8N6M8 205 aa5□□□□□ -1.61
CUX1-220ENST00000607092 ZNF565Q8N9K5 539 aa5□□□□□ -1.61
CUX1-220ENST00000607092 KLHL30-AS1Q8NEE0 82 aa5□□□□□ -1.61
CUX1-220ENST00000607092 OR14K1Q8NGZ2 314 aa5□□□□□ -1.61
CUX1-220ENST00000607092 OR9G1Q8NH87 305 aa5□□□□□ -1.61
CUX1-220ENST00000607092 HAVCR2Q8TDQ0 301 aa5□□□□□ -1.61
CUX1-220ENST00000607092 NRG4Q8WWG1 115 aa5□□□□□ -1.61
CUX1-220ENST00000607092 EDARADDQ8WWZ3 215 aa5□□□□□ -1.61
CUX1-220ENST00000607092 PYDC1Q8WXC3 89 aa5□□□□□ -1.61
CUX1-220ENST00000607092 TOMM40LQ969M1 308 aa5□□□□□ -1.61
CUX1-220ENST00000607092 SPSB1Q96BD6 273 aa5□□□□□ -1.61
CUX1-220ENST00000607092 CPNE2Q96FN4 548 aaPredicted RBP5□□□□□ -1.61
CUX1-220ENST00000607092 P2RX4Q99571 388 aa5□□□□□ -1.61
CUX1-220ENST00000607092 NIPSNAP1Q9BPW8 284 aa5□□□□□ -1.61
CUX1-220ENST00000607092 CHCHD6Q9BRQ6 235 aa5□□□□□ -1.61
CUX1-220ENST00000607092 CHST5Q9GZS9 411 aa5□□□□□ -1.61
CUX1-220ENST00000607092 VCXQ9H320 206 aa5□□□□□ -1.61
CUX1-220ENST00000607092 NCOR1P1Q9H4R4 102 aa5□□□□□ -1.61
CUX1-220ENST00000607092 PALMDQ9NP74 551 aa5□□□□□ -1.61
CUX1-220ENST00000607092 EXOSC4Q9NPD3 245 aaKnown RBP5□□□□□ -1.61
CUX1-220ENST00000607092 CLN6Q9NWW5 311 aa5□□□□□ -1.61
CUX1-220ENST00000607092 HHLA2Q9UM44 414 aa5□□□□□ -1.61
CUX1-220ENST00000607092 DNAH7Q8WXX0 4024 aa5□□□□□ -1.61
CUX1-220ENST00000607092 DYNC2H1Q8NCM8 4307 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 A0A087X0M5 115 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 A0A1B0GX30 115 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 TMEM82A0PJX8 343 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 ZNF729A6NN14 1252 aaPredicted RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 DENRO43583 198 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 SULT1C4O75897 302 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 IGHG2P01859 326 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 ELANEP08246 267 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 SNRNP70P08621 437 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 SLC2A5P22732 501 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 C21orf33P30042 268 aaPredicted RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 CXCR4P61073 352 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 ZNF91Q05481 1191 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 MADCAM1Q13477 382 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 HES1Q14469 280 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 PNLIPRP3Q17RR3 467 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 LDLRAD2Q5SZI1 272 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 FAM27D1Q5T7N8 215 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 Q6ZS46 218 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 LHFPL2Q6ZUX7 228 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 UTS2BQ765I0 119 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 MEPCEQ7L2J0 689 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 FAM220AQ7Z4H9 259 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 SLC35E3Q7Z769 313 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 ANGPTL5Q86XS5 388 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 GID4Q8IVV7 300 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 PACRGLQ8N7B6 248 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 OR10A7Q8NGE5 316 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 OR8H1Q8NGG4 311 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 MUC7Q8TAX7 377 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 TRMT10AQ8TBZ6 339 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 TFAP2CQ92754 450 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 SLAMF9Q96A28 289 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 CENPNQ96H22 339 aaPredicted RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 BARHL1Q9BZE3 327 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 Q9H521 79 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 RAB9BQ9NP90 201 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 MTCH1Q9NZJ7 389 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 RAB26Q9ULW5 256 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 KLHDC2Q9Y2U9 406 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 LSM4Q9Y4Z0 139 aaKnown RBP4.99□□□□□ -1.61
CUX1-220ENST00000607092 SMAD5-AS1Q9Y6J3 95 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 SORL1Q92673 2214 aa4.99□□□□□ -1.61
CUX1-220ENST00000607092 A0A1B0GTI1 187 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 TCRBV5S2A0A599 114 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ODAMA1E959 279 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 MAGEA13PA6NCF6 341 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A18PA6NE21 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A16PA6NEW6 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A20PA6NIJ5 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A9PA6NNJ1 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A12PA8MX19 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A5PA8MXJ8 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 CCL24O00175 119 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 CCRL2O00421 344 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 MPZL2O60487 215 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 INMTO95050 263 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A15PP0C7V4 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A13PP0C7W8 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A14PP0C7W9 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 FAM90A24PP0C7X0 464 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 DBTP11182 482 aaKnown RBP4.98□□□□□ -1.61
CUX1-220ENST00000607092 ZNF44P15621 663 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 ZNF20P17024 532 aa4.98□□□□□ -1.61
CUX1-220ENST00000607092 TMEM11P17152 192 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms