RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, human

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIM28-215	ENST00000601150	HEXA-AS1	Q9H8Q6	139 aa		13.79	□□□□□ -0.2
TRIM28-215	ENST00000601150	PCDHB16	Q9NRJ7	776 aa		13.79	□□□□□ -0.2
TRIM28-215	ENST00000601150	LINC00312	Q9Y6C7	94 aa		13.79	□□□□□ -0.2
TRIM28-215	ENST00000601150		A0A0U1RQK1	487 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150		A0A1W2PRD5	423 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150		A0A1W2PRF3	423 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150		A0A1W2PRM7	423 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	FUOM	A2VDF0	154 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	MEGF11	A6BM72	1044 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	C17orf98	A8MV24	154 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	CLDN34	H7C241	214 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	SLC33A1	O00400	549 aa	Predicted RBP	13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	MRPS14	O60783	128 aa	Known RBP	13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	ZNF780A	O75290	641 aa	Predicted RBP	13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	RBP4	P02753	201 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	CSN2	P05814	226 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	CPE	P16870	476 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	ERVFRD-1	P60508	538 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	GPR176	Q14439	515 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	SLC9A3R2	Q15599	337 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	TRAM1	Q15629	374 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150		Q6YL49	198 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	TCF23	Q7RTU1	214 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	CEACAM19	Q7Z692	300 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	OSR2	Q8N2R0	312 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	TPRX1	Q8N7U7	411 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	MUL1	Q969V5	352 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	ZNF714	Q96N38	554 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	DUX5	Q96PT3	197 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	TCF7L1	Q9HCS4	588 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	MRPS28	Q9Y2Q9	187 aa	Known RBP	13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	SF3B6	Q9Y3B4	125 aa	Known RBP	13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	FAM96B	Q9Y3D0	163 aa		13.78	□□□□□ -0.2
TRIM28-215	ENST00000601150	MEX3A	A1L020	520 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	HOXA3	O43365	443 aa	Predicted RBP	13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	SC5D	O75845	299 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	MELTF	P08582	738 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	SERPINA2	P20848	420 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	PSMA1	P25786	263 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	SAA4	P35542	130 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	PIGY	Q3MUY2	71 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	NHLRC3	Q5JS37	347 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	FAM27D1	Q5T7N8	215 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	HCP5	Q6MZN7	132 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	ZNF367	Q7RTV3	350 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	PNKD	Q8N490	385 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	PHYHIP	Q92561	330 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	TMEM203	Q969S6	136 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	SLC25A28	Q96A46	364 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	YTHDF1	Q9BYJ9	559 aa	Known RBP	13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	ACOT13	Q9NPJ3	140 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	ST3GAL6	Q9Y274	331 aa		13.77	□□□□□ -0.21
TRIM28-215	ENST00000601150	MEIOC	A2RUB1	952 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	RNASE1	P07998	156 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	FBP1	P09467	338 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	UCHL1	P09936	223 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	GTF2F2	P13984	249 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	GP2	P55259	537 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	RBM11	P57052	281 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	RPS25	P62851	125 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	ACTG1	P63261	375 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	AES	Q08117	197 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	SLC22A6	Q4U2R8	563 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	MIDN	Q504T8	468 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	HSD17B12	Q53GQ0	312 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	PAN3	Q58A45	887 aa	Known RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	KRBOX4	Q5JUW0	171 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	GLIPR1L1	Q6UWM5	242 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	ZNF782	Q6ZMW2	699 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	TRAPPC6B	Q86SZ2	158 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	LINC00596	Q86U02	117 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	LYPD6	Q86Y78	171 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	LDLRAD3	Q86YD5	345 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	SVOP	Q8N4V2	548 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	UQCC2	Q9BRT2	126 aa		13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	UBE2J1	Q9Y385	318 aa	Predicted RBP	13.76	□□□□□ -0.21
TRIM28-215	ENST00000601150	KIAA2026	Q5HYC2	2103 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	TRGV10	A0A0A0MS01	117 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	TRAV24	A0A0B4J272	114 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	SRM	P19623	302 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	COX7A1	P24310	79 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	GLIPR1	P48060	266 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	EMX1	Q04741	257 aa	Predicted RBP	13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	ATXN7L3	Q14CW9	347 aa	Predicted RBP	13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	AWAT2	Q6E213	333 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	LRRTM1	Q86UE6	522 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	TMEM86B	Q8N661	226 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	OR4D6	Q8NGJ1	314 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	SSMEM1	Q8WWF3	244 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	FOXRED1	Q96CU9	486 aa	Predicted RBP	13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	MRPS24	Q96EL2	167 aa	Known RBP	13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	COQ2	Q96H96	371 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	SLITRK2	Q9H156	845 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150	IFT22	Q9H7X7	185 aa		13.75	□□□□□ -0.21
TRIM28-215	ENST00000601150		A0A1W2PP11	408 aa		13.74	□□□□□ -0.21
TRIM28-215	ENST00000601150	ODAM	A1E959	279 aa		13.74	□□□□□ -0.21
TRIM28-215	ENST00000601150	HSPB6	O14558	160 aa		13.74	□□□□□ -0.21
TRIM28-215	ENST00000601150	OR7C1	O76099	320 aa	Predicted RBP	13.74	□□□□□ -0.21
TRIM28-215	ENST00000601150	PAH	P00439	452 aa		13.74	□□□□□ -0.21
TRIM28-215	ENST00000601150	IGHV1-8	P0DP01	117 aa		13.74	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms