RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CDAP32320 146 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 ATP1B3P54709 279 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 ROM1Q03395 351 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 PLP2Q04941 152 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 EGR4Q05215 589 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 CHCHD2P9Q5T1J5 151 aaPredicted RBP9.18□□□□□ -0.94
LIG1-220ENST00000601091 GGNBP1Q5YKI7 109 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 GVQW1Q8N7I0 195 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 CADM4Q8NFZ8 388 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 ZNF75AQ96N20 296 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 NXT1Q9UKK6 140 aaKnown RBP9.18□□□□□ -0.94
LIG1-220ENST00000601091 PIGLQ9Y2B2 252 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 NSG1A0A0A6YYJ2 146 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 TGFBR3LH3BV60 316 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 OR7C2O60412 319 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 DFFBO76075 338 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 OR2A4O95047 310 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 ECI1P42126 302 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 SELENOTP62341 195 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 MALLQ13021 153 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 NSUN5P2Q63ZY6 315 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 BHLHA15Q7RTS1 189 aaPredicted RBP9.18□□□□□ -0.94
LIG1-220ENST00000601091 FAM24BQ8N5W8 94 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 EMG1Q92979 244 aaKnown RBP9.18□□□□□ -0.94
LIG1-220ENST00000601091 MCHR2Q969V1 340 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 OR2A7Q96R45 310 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 MAGT1Q9H0U3 335 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 TNFSF18Q9UNG2 199 aa9.18□□□□□ -0.94
LIG1-220ENST00000601091 A0A1B0GV50 99 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 LOC102725191A0A1B0GVB3 256 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 G3V3Y1 287 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 RAMP3O60896 148 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 NME2P22392 152 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 MMP16P51512 607 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 DMRTC1Q5HYR2 192 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 TMEM71Q6P5X7 295 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 C15orf54Q8N8G6 183 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 HDGFL3Q9Y3E1 203 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 CDC14BO60729 498 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 DUS4LO95620 317 aaKnown RBP9.17□□□□□ -0.94
LIG1-220ENST00000601091 HLA-DOBP13765 273 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 CD80P33681 288 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 CAV2P51636 162 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 SLC26A10Q8NG04 563 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 MSL2Q9HCI7 577 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 CLEC1BQ9P126 229 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 ONECUT1Q9UBC0 465 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 MYOTQ9UBF9 498 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 PLXNA2O75051 1894 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 SSR4P51571 173 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 RAB11AP62491 216 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 FAM3AP98173 230 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 OR2W3Q7Z3T1 314 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 C1orf87Q8N0U7 546 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 PLPP5Q8NEB5 264 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 NOXO1Q8NFA2 376 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 PHYHIPLQ96FC7 376 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 FOXQ1Q9C009 403 aa9.17□□□□□ -0.94
LIG1-220ENST00000601091 PRR19A6NJB7 356 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 FOLR3P41439 243 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 ZNF133P52736 654 aaPredicted RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 NXPH1P58417 271 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 ARF6P62330 175 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 TMEM182Q6ZP80 229 aaPredicted RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 OR8I2Q8N0Y5 310 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 KCNRGQ8N5I3 272 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 OR10AD1Q8NGE0 317 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 RHBDD1Q8TEB9 315 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 PIGCQ92535 297 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 HIST1H2BAQ96A08 127 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 SLC25A28Q96A46 364 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 SPIN2AQ99865 258 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 SPIN2BQ9BPZ2 258 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 SULT4A1Q9BR01 284 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 PARP12Q9H0J9 701 aaKnown RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 ZNF286AQ9HBT8 521 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 PLXNB3Q9ULL4 1909 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 RER1O15258 196 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 SYNGR4O95473 234 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 RAB5AP20339 215 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 HOXA5P20719 270 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 PCBD1P61457 104 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 TMEM268Q5VZI3 342 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 AAED1Q7RTV5 226 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 D2HGDHQ8N465 521 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 RNF133Q8WVZ7 376 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 PTX4Q96A99 478 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 C2orf50Q96LR7 162 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 NOTCH4Q99466 2003 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 TIMP4Q99727 224 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 TAF9BQ9HBM6 251 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 KCNJ16Q9NPI9 418 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 MED9Q9NWA0 146 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 ERRFI1Q9UJM3 462 aaPredicted RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 HELZP42694 1942 aaKnown RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 M0R135 149 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 TAAR5O14804 337 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 OR7C1O76099 320 aaPredicted RBP9.16□□□□□ -0.94
LIG1-220ENST00000601091 ZNF728P0DKX0 622 aa9.16□□□□□ -0.94
LIG1-220ENST00000601091 HIST1H1DP16402 221 aaKnown RBP9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms