RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HLA-DQB1P01920 261 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 CHRM2P08172 466 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 PPIAL4FP0DN26 164 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 IRF2P14316 349 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF16P17020 682 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 GABRR1P24046 479 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 LMO1P25800 156 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 BLVRBP30043 206 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 PRDX2P32119 198 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 S100A5P33763 92 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ETV6P41212 452 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 CEBPDP49716 269 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 LOXL1Q08397 574 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 IL13RA2Q14627 380 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF260Q3ZCT1 412 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 BRICD5Q6PL45 260 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A1Q86YD7 464 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 C1orf87Q8N0U7 546 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 MFSD4AQ8N468 514 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 CD177Q8N6Q3 437 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 DEFB108BQ8NET1 73 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 OR10R2Q8NGX6 335 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ANGPTL6Q8NI99 470 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 HPS1Q92902 700 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ABHD1Q96SE0 405 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 IFT22Q9H7X7 185 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 SEBOXQ9HB31 216 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 AKIP1Q9NQ31 210 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 DIABLOQ9NR28 239 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 EXTL2Q9UBQ6 330 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 METRNQ9UJH8 293 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF222Q9UK12 451 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 ELF5Q9UKW6 265 aaPredicted RBP7.86□□□□□ -1.15
TRIM28-208ENST00000597172 KCNS2Q9ULS6 477 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 KCNK7Q9Y2U2 307 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 PPIAL4AQ9Y536 164 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 V9GYH0 126 aa7.86□□□□□ -1.15
TRIM28-208ENST00000597172 TRAV18A0A075B6X5 111 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV4-30-2A0A087WSY4 118 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 A0A0A6YYH2 397 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A10PA6NDY2 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A18PA6NE21 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A16PA6NEW6 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FABP12A6NFH5 140 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A20PA6NIJ5 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 A6NJ64 397 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A8PA6NJQ4 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A7PA6NKC0 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 OR2AT4A6NND4 320 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A22PA8MWA6 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A12PA8MX19 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A5PA8MXJ8 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A23PA8MXZ1 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 SH2D1BO14796 132 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 DEGS1O15121 323 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FSTL3O95633 263 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 OR2H2O95918 312 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 HAND1O96004 215 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 IGHV2-70P01814 119 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 GYPAP02724 150 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A15PP0C7V4 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A13PP0C7W8 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A14PP0C7W9 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FAM90A24PP0C7X0 464 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 PTHLHP12272 177 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 MUC1P15941 1255 aaPredicted RBP7.85□□□□□ -1.15
TRIM28-208ENST00000597172 GNB3P16520 340 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 CPT2P23786 658 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 CHATP28329 748 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 TMEM33P57088 247 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 SCN1BQ07699 218 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 IKZF1Q13422 519 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ZMYND11Q15326 602 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 MICBQ29980 383 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 MPV17LQ2QL34 196 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 SMIM21Q3B7S5 101 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 CDNFQ49AH0 187 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 FBLN7Q53RD9 439 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 SPIN3Q5JUX0 258 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ATPAF1Q5TC12 328 aaPredicted RBP7.85□□□□□ -1.15
TRIM28-208ENST00000597172 OLFML2AQ68BL7 652 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 STUMQ69YW2 141 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 RAB12Q6IQ22 244 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 Q6ZTK2 550 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 C6orf201Q7Z4U5 140 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 LINC00596Q86U02 117 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ZNF525Q8N782 197 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 OR56B1Q8NGI3 324 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ARHGAP5-AS1Q96IT6 56 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 NUDT16L1Q9BRJ7 211 aaKnown RBP7.85□□□□□ -1.15
TRIM28-208ENST00000597172 PECRQ9BY49 303 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ZMAT3Q9HA38 289 aaKnown RBP7.85□□□□□ -1.15
TRIM28-208ENST00000597172 RCC2Q9P258 522 aaKnown RBP7.85□□□□□ -1.15
TRIM28-208ENST00000597172 OR14J1Q9UGF5 321 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 ADAM30Q9UKF2 790 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 MAB21L2Q9Y586 359 aa7.85□□□□□ -1.15
TRIM28-208ENST00000597172 TRAV38-1A0A0B4J264 116 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 A0A0G2JMP0 313 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 A0A0X1KG70 313 aa7.84□□□□□ -1.15
TRIM28-208ENST00000597172 A0A1B0GW55 424 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms