RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 MXRA5Q9NR99 2828 aa12.33□□□□□ -0.44
UPF1-202ENST00000594243 STAB1Q9NY15 2570 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 CUBNO60494 3623 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 TRIM77I1YAP6 450 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 SLC33A1O00400 549 aaPredicted RBP12.32□□□□□ -0.44
UPF1-202ENST00000594243 CSN2P05814 226 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 SERPINA2P20848 420 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 OR3A1P47881 315 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 UBE2E1P51965 193 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 GP2P55259 537 aaKnown RBP12.32□□□□□ -0.44
UPF1-202ENST00000594243 SLC22A6Q4U2R8 563 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 NHLRC3Q5JS37 347 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 FAM27D1Q5T7N8 215 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 RUSC1-AS1Q66K80 236 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 AWAT2Q6E213 333 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 GLIPR1L1Q6UWM5 242 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 TMEM91Q6ZNR0 172 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 LINC00596Q86U02 117 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 LYPD6Q86Y78 171 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 PDZD9Q8IXQ8 264 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 TNFRSF14Q92956 283 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 HEXA-AS1Q9H8Q6 139 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 LINC00312Q9Y6C7 94 aa12.32□□□□□ -0.44
UPF1-202ENST00000594243 C17orf98A8MV24 154 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 RNASEK-C17orf49H0YIS7 233 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 RBP4P02753 201 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 ZNF728P0DKX0 622 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 CCL3L1P16619 93 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 P2RX3P56373 397 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 ERVFRD-1P60508 538 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 SRSF2Q01130 221 aaKnown RBP12.31□□□□□ -0.44
UPF1-202ENST00000594243 AESQ08117 197 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 BAMBIQ13145 260 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 ZNF273Q14593 569 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 PIGYQ3MUY2 71 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 UBE2UQ5VVX9 321 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 LRRTM1Q86UE6 522 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 C11orf42Q8N5U0 333 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 TPRX1Q8N7U7 411 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 ZDHHC16Q969W1 377 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 ZNF48Q96MX3 618 aaPredicted RBP12.31□□□□□ -0.44
UPF1-202ENST00000594243 ZNF714Q96N38 554 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 BARHL1Q9BZE3 327 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 PPA2Q9H2U2 334 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 PRDM13Q9H4Q3 707 aa12.31□□□□□ -0.44
UPF1-202ENST00000594243 UBE2J1Q9Y385 318 aaPredicted RBP12.31□□□□□ -0.44
UPF1-202ENST00000594243 CCRL2O00421 344 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 UBBP0CG47 229 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 KCNJ3P48549 501 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 RBM11P57052 281 aaKnown RBP12.3□□□□□ -0.44
UPF1-202ENST00000594243 FABP5Q01469 135 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 MPV17LQ2QL34 196 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 DEFB112Q30KQ8 113 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 KRTAP24-1Q3LI83 254 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 KCTD21Q4G0X4 260 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 PAN3Q58A45 887 aaKnown RBP12.3□□□□□ -0.44
UPF1-202ENST00000594243 KRBOX4Q5JUW0 171 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 ZNF773Q6PK81 442 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 TRAPPC6BQ86SZ2 158 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 ZDHHC22Q8N966 263 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 OR4D6Q8NGJ1 314 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 CORO2AQ92828 525 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 PPIL3Q9H2H8 161 aaKnown RBP12.3□□□□□ -0.44
UPF1-202ENST00000594243 IFT22Q9H7X7 185 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 ZMAT3Q9HA38 289 aaKnown RBP12.3□□□□□ -0.44
UPF1-202ENST00000594243 NDUFB11Q9NX14 153 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 FAM96BQ9Y3D0 163 aa12.3□□□□□ -0.44
UPF1-202ENST00000594243 SOX21Q9Y651 276 aaPredicted RBP12.3□□□□□ -0.44
UPF1-202ENST00000594243 TRGV10A0A0A0MS01 117 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 TRAV24A0A0B4J272 114 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 H3BUI4 141 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 GEMIN2O14893 280 aaKnown RBP12.29□□□□□ -0.44
UPF1-202ENST00000594243 NPFFO15130 113 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 OR7C1O76099 320 aaPredicted RBP12.29□□□□□ -0.44
UPF1-202ENST00000594243 CD37P11049 281 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 GALP22466 123 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 RANBP1P43487 201 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 GLIPR1P48060 266 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 PSMD7P51665 324 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 DLX1P56177 255 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 DLX6P56179 175 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 KLRD1Q13241 179 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 SSX1Q16384 188 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 C1orf100Q5SVJ3 147 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 Q6YL49 198 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 PIP4P2Q8N4L2 257 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 ZNF565Q8N9K5 539 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 FAM216AQ8WUB2 273 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 CST11Q9H112 138 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 GAL3ST2Q9H3Q3 398 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 NCOR1P1Q9H4R4 102 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 TAS2R3Q9NYW6 316 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 FBN3Q75N90 2809 aa12.29□□□□□ -0.44
UPF1-202ENST00000594243 A0A0U1RQK1 487 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 A0A1W2PP11 408 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 CLDN34H7C241 214 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 HSPB6O14558 160 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 CRTAPO75718 401 aaPredicted RBP12.28□□□□□ -0.44
UPF1-202ENST00000594243 IGHV1-8P0DP01 117 aa12.28□□□□□ -0.44
UPF1-202ENST00000594243 CALRP27797 417 aaKnown RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms