RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 RNASEK-C17orf49H0YIS7 233 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SLC33A1O00400 549 aaPredicted RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 ARL6IP5O75915 188 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 ZNF728P0DKX0 622 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 GTF2F2P13984 249 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SRMP19623 302 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SERPINA2P20848 420 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 UBE2E1P51965 193 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 GP2P55259 537 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 P2RX3P56373 397 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 RBM11P57052 281 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 RPS25P62851 125 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 SRSF2Q01130 221 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 ZNF273Q14593 569 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 KRTAP24-1Q3LI83 254 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 PIGYQ3MUY2 71 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SLC22A6Q4U2R8 563 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 RUSC1-AS1Q66K80 236 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 AWAT2Q6E213 333 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SPARTQ8N0X7 666 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 TNFRSF14Q92956 283 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 MUL1Q969V5 352 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 FOXRED1Q96CU9 486 aaPredicted RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 MRPS24Q96EL2 167 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 ZNF48Q96MX3 618 aaPredicted RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 MDFIQ99750 246 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SLITRK2Q9H156 845 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 PPA2Q9H2U2 334 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 PRDM13Q9H4Q3 707 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 IFT22Q9H7X7 185 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 ZMAT3Q9HA38 289 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 NDUFB11Q9NX14 153 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 ST3GAL6Q9Y274 331 aa9.75□□□□□ -0.85
LIG3-213ENST00000590630 SF3B6Q9Y3B4 125 aaKnown RBP9.75□□□□□ -0.85
LIG3-213ENST00000590630 C17orf98A8MV24 154 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 TRIM77I1YAP6 450 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 CCL3L1P16619 93 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 KCNJ3P48549 501 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 DLX6P56179 175 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 ERVFRD-1P60508 538 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 MPV17LQ2QL34 196 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 KCTD21Q4G0X4 260 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 UBE2UQ5VVX9 321 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 GLT8D1Q68CQ7 371 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 ZNF773Q6PK81 442 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 GLIPR1L1Q6UWM5 242 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 TMEM91Q6ZNR0 172 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 LRRTM1Q86UE6 522 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 PDZD9Q8IXQ8 264 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 C11orf42Q8N5U0 333 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 OR4D6Q8NGJ1 314 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 ZNF714Q96N38 554 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 PPIL3Q9H2H8 161 aaKnown RBP9.74□□□□□ -0.85
LIG3-213ENST00000590630 HEXA-AS1Q9H8Q6 139 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 ESM1Q9NQ30 184 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 GHRLQ9UBU3 117 aa9.74□□□□□ -0.85
LIG3-213ENST00000590630 UBE2J1Q9Y385 318 aaPredicted RBP9.74□□□□□ -0.85
LIG3-213ENST00000590630 TENM1Q9UKZ4 2725 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 TRGV10A0A0A0MS01 117 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 TRAV24A0A0B4J272 114 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 DNAJC9-AS1A6NH13 148 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 CLDN34H7C241 214 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 NPFFO15130 113 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 OR7C1O76099 320 aaPredicted RBP9.73□□□□□ -0.85
LIG3-213ENST00000590630 UBBP0CG47 229 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 GALP22466 123 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 DLX1P56177 255 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 FABP5Q01469 135 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 PAX5Q02548 391 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 AESQ08117 197 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 BAMBIQ13145 260 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 KLRD1Q13241 179 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 ATXN7L3Q14CW9 347 aaPredicted RBP9.73□□□□□ -0.85
LIG3-213ENST00000590630 SSX1Q16384 188 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 DEFB112Q30KQ8 113 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 MIDNQ504T8 468 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 PAN3Q58A45 887 aaKnown RBP9.73□□□□□ -0.85
LIG3-213ENST00000590630 KRBOX4Q5JUW0 171 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 CD200R1LQ6Q8B3 271 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 TCF23Q7RTU1 214 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 TRAPPC6BQ86SZ2 158 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 PIP4P2Q8N4L2 257 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 TPRX1Q8N7U7 411 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 ZDHHC22Q8N966 263 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 FAM216AQ8WUB2 273 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 ZDHHC16Q969W1 377 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 C1orf147Q96MC9 270 aaPredicted RBP9.73□□□□□ -0.85
LIG3-213ENST00000590630 C19orf24Q9BVV8 132 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 GAL3ST2Q9H3Q3 398 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 SPACA1Q9HBV2 294 aa9.73□□□□□ -0.85
LIG3-213ENST00000590630 SOX21Q9Y651 276 aaPredicted RBP9.73□□□□□ -0.85
LIG3-213ENST00000590630 A0A0U1RQK1 487 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 MDFIC2A0A1B0GVS7 189 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 A0A1W2PP11 408 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 ODAMA1E959 279 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 CCRL2O00421 344 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 HSPB6O14558 160 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 GEMIN2O14893 280 aaKnown RBP9.72□□□□□ -0.85
LIG3-213ENST00000590630 IGHV1-8P0DP01 117 aa9.72□□□□□ -0.85
LIG3-213ENST00000590630 CD37P11049 281 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms