RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 S100A2P29034 98 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 PEX19P40855 299 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 XKP51811 444 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 SPAG1Q07617 926 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 FOXF1Q12946 379 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 TAL2Q16559 108 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 NDUFAF6Q330K2 333 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 ACSBG2Q5FVE4 666 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 ZNF767PQ75MW2 155 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 RBM45Q8IUH3 476 aaKnown RBP1.98□□□□□ -2.09
SS18-214ENST00000580003 ARHGAP18Q8N392 663 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 OR5C1Q8NGR4 320 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 OR51Q1Q8NH59 317 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 TTTY12Q9BZ98 90 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 PRORYQ9H606 182 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 DNAJC27Q9NZQ0 273 aa1.98□□□□□ -2.09
SS18-214ENST00000580003 WDR19Q8NEZ3 1342 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 CASC3O15234 703 aaKnown RBP1.97□□□□□ -2.09
SS18-214ENST00000580003 ARL14EPLP0DKL9 152 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 PSKH1P11801 424 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 PSMB9P28065 219 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 COILP38432 576 aaPredicted RBP1.97□□□□□ -2.09
SS18-214ENST00000580003 DYNC1I2Q13409 638 aaKnown RBP1.97□□□□□ -2.09
SS18-214ENST00000580003 ACTBL2Q562R1 376 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 FER1L6-AS1Q8NA97 138 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 AGR3Q8TD06 166 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 FMC1Q96HJ9 113 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 OLFM3Q96PB7 478 aa1.97□□□□□ -2.09
SS18-214ENST00000580003 EEF1E1O43324 174 aaKnown RBP1.96□□□□□ -2.1
SS18-214ENST00000580003 OR12D1P0DN82 309 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 LINC00523Q86TU6 105 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 GAPTQ8N292 157 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 CCL17Q92583 94 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 B9D2Q9BPU9 175 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 VPREB3Q9UKI3 123 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 CCL26Q9Y258 94 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 FBN3Q75N90 2809 aa1.96□□□□□ -2.1
SS18-214ENST00000580003 IGHV1-45A0A0A0MS14 117 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 RBFOX3A6NFN3 312 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 C17orf98A8MV24 154 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 H0YIV9 168 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 GYPCP04921 128 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 CEACAM16Q2WEN9 425 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 ZCWPW2Q504Y3 356 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 C10orf91Q5T1B1 145 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 NXNL2Q5VZ03 156 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 LAIR2Q6ISS4 152 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 NIPAL1Q6NVV3 410 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 TPGS1Q6ZTW0 290 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 MARCH3Q86UD3 253 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 ATPAF2Q8N5M1 289 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 HIST1H2BAQ96A08 127 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 FAM131CQ96AQ9 280 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 CMBLQ96DG6 245 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 VAT1Q99536 393 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 AICDAQ9GZX7 198 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 ARL6Q9H0F7 186 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 POMKQ9H5K3 350 aa1.95□□□□□ -2.1
SS18-214ENST00000580003 POLR3AO14802 1390 aaPredicted RBP1.95□□□□□ -2.1
SS18-214ENST00000580003 GOLGA7BQ2TAP0 167 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 SCXQ7RTU7 201 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 NIT1Q86X76 327 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 OR51L1Q8NGJ5 315 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 DOK4Q8TEW6 326 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 BLNKQ8WV28 456 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 ZNF707Q96C28 371 aaPredicted RBP1.94□□□□□ -2.1
SS18-214ENST00000580003 LINC01587Q99440 93 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 TSSK6Q9BXA6 273 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 BEX2Q9BXY8 128 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 SLC23A2Q9UGH3 650 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 URGCP-MRPS24S4R325 110 aa1.94□□□□□ -2.1
SS18-214ENST00000580003 TTC41PQ6P2S7 1318 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 PGPA6NDG6 321 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 SRMP19623 302 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 M6PRP20645 277 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 RAB25P57735 213 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 DOC2AQ14183 400 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 HSP90AA4PQ58FG1 418 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 SLC25A25Q6KCM7 469 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 GPR119Q8TDV5 335 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 CPB2Q96IY4 423 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 NXF2Q9GZY0 626 aaKnown RBP1.93□□□□□ -2.1
SS18-214ENST00000580003 SLC25A31Q9H0C2 315 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 DIABLOQ9NR28 239 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 TAS2R9Q9NYW1 312 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 V9GYY9 64 aa1.93□□□□□ -2.1
SS18-214ENST00000580003 A0A1B0GTI1 187 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 ERICH4A6NGS2 130 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 TVP23AA6NH52 213 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 KNCNA6PVL3 124 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 LECT2O14960 151 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 HMMRO75330 724 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 CRABP1P29762 137 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 BLVRBP30043 206 aaPredicted RBP1.92□□□□□ -2.1
SS18-214ENST00000580003 PRDX4Q13162 271 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 OR52K1Q8NGK4 314 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 ADTRPQ96IZ2 230 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 ACOT13Q9NPJ3 140 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 KCNIP2Q9NS61 270 aa1.92□□□□□ -2.1
SS18-214ENST00000580003 RPUSD1Q9UJJ7 312 aaKnown RBP1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms