RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF286AQ9HBT8 521 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 INPP5EQ9NRR6 644 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 GNG8Q9UK08 70 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 GSTK1Q9Y2Q3 226 aa16.78■□□□□ 0.28
VPS53-216ENST00000574029 A0A087X0M5 115 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 IGKV1-12A0A0C4DH73 117 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 A0A1B0GX30 115 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 FAM172BPA6NC97 362 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 LY6LH3BQJ8 138 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 BUB1B-PAK6H3BSN5 160 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 KDM4BO94953 1096 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 IGKV1D-12P01611 117 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 ISG15P05161 165 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 ATP6V1E1P36543 226 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 CEACAM3P40198 252 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 GLIPR1P48060 266 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 AESQ08117 197 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 HLA-DRB5Q30154 266 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 ZIK1Q3SY52 487 aaPredicted RBP16.77■□□□□ 0.28
VPS53-216ENST00000574029 SLC25A30Q5SVS4 291 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 TPTE2P1Q5T6R2 138 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 OR2G2Q8NGZ5 317 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 SPSB1Q96BD6 273 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 FGGYQ96C11 551 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 MBOAT4Q96T53 435 aa16.77■□□□□ 0.28
VPS53-216ENST00000574029 SH2D7A6NKC9 451 aaPredicted RBP16.76■□□□□ 0.27
VPS53-216ENST00000574029 CSN2P05814 226 aa16.76■□□□□ 0.27
VPS53-216ENST00000574029 EGFEM1PQ0D2K5 195 aa16.76■□□□□ 0.27
VPS53-216ENST00000574029 OPALINQ96PE5 141 aa16.76■□□□□ 0.27
VPS53-216ENST00000574029 FRRS1LQ9P0K9 344 aa16.76■□□□□ 0.27
VPS53-216ENST00000574029 WI2-2373I1.2A0A1W2PRP0 233 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 ODAMA1E959 279 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 OOSP1A8MZH6 123 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 M0QZK8 103 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 TOR1AO14656 332 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 CLIC3O95833 236 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 ZNF20P17024 532 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 PTGFRP43088 359 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 PRRX1P54821 245 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 SNRPGP62308 76 aaKnown RBP16.75■□□□□ 0.27
VPS53-216ENST00000574029 FDX2Q6P4F2 183 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 RNF144BQ7Z419 303 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 OSR2Q8N2R0 312 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 LINC00482Q8N8I6 264 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 RFKQ969G6 155 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 RFT1Q96AA3 541 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 COQ2Q96H96 371 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 RDH12Q96NR8 316 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 RHOFQ9HBH0 211 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 C8orf4Q9NR00 106 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 PCDHGB5Q9Y5G0 923 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 KIAA2026Q5HYC2 2103 aa16.75■□□□□ 0.27
VPS53-216ENST00000574029 MT-ND2P03891 347 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 NANOS3P60323 173 aaKnown RBP16.74■□□□□ 0.27
VPS53-216ENST00000574029 RCN1Q15293 331 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 C17orf58Q2M2W7 97 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 DEFB121Q5J5C9 76 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 KHDC1LQ5JSQ8 128 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 CCDC144NLQ6NUI1 221 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 C11orf87Q6NUJ2 197 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 Q6P435 159 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 KCTD20Q7Z5Y7 419 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 SAXO1Q8IYX7 474 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 OR4D6Q8NGJ1 314 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 IMPAD1Q9NX62 359 aa16.74■□□□□ 0.27
VPS53-216ENST00000574029 ZNF729A6NN14 1252 aaPredicted RBP16.73■□□□□ 0.27
VPS53-216ENST00000574029 SLC33A1O00400 549 aaPredicted RBP16.73■□□□□ 0.27
VPS53-216ENST00000574029 SLC16A6O15403 523 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 ZNF44P15621 663 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 MNDAP41218 407 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 KRBOX4Q5JUW0 171 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 UTF1Q5T230 341 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 CHST4Q8NCG5 386 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 FAM118AQ9NWS6 357 aa16.73■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A18PA6NE21 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A16PA6NEW6 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A20PA6NIJ5 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A9PA6NNJ1 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A12PA8MX19 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A5PA8MXJ8 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 J3QRE1 110 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A15PP0C7V4 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A13PP0C7W8 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A14PP0C7W9 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 FAM90A24PP0C7X0 464 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 OR3A4PP47883 348 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 CCR9P51686 369 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 SCN1BQ07699 218 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 C9orf152Q5JTZ5 239 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 MEDAGQ5VYS4 303 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 ETV3LQ6ZN32 361 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 THNSL2Q86YJ6 484 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 PACRGLQ8N7B6 248 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 OR5D18Q8NGL1 313 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 OR10AC1Q8NH08 325 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 SPACA5Q96QH8 159 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.72■□□□□ 0.27
VPS53-216ENST00000574029 MOB4Q9Y3A3 225 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 GMPPBQ9Y5P6 360 aa16.72■□□□□ 0.27
VPS53-216ENST00000574029 HSPE1-MOB4S4R3N1 261 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms