RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PIGBOS1A0A0B4J2F0 54 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 CCL3P10147 92 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 TMEM42Q69YG0 159 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 TBC1D26Q86UD7 250 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 ZIC4Q8N9L1 334 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 DNASE2BQ8WZ79 361 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF837Q96EG3 531 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-207ENST00000572253 MMP24Q9Y5R2 645 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 IGKV1-12A0A0C4DH73 117 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 CBR3O75828 277 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 IFNA5P01569 189 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 IGKV1D-12P01611 117 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 KLK3P07288 261 aaPredicted RBP9.31□□□□□ -0.92
CCDC40-207ENST00000572253 MMP9P14780 707 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 B4GALT1P15291 398 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 NDUFA6P56556 154 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 PRSS12P56730 875 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 PCOLCEQ15113 449 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF429Q86V71 674 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 CMTM1Q8IZ96 169 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 IL22RA1Q8N6P7 574 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 EXTL1Q92935 676 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 MR1Q95460 341 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 RAB39BQ96DA2 213 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 TVP23CQ96ET8 276 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 MAGT1Q9H0U3 335 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 SIRT7Q9NRC8 400 aa9.31□□□□□ -0.92
CCDC40-207ENST00000572253 IGHV5-10-1A0A0J9YXX1 117 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 C9J4A7 227 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 ADAM20O43506 726 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 IGFBP4P22692 258 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 LMO1P25800 156 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 RAC3P60763 192 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 RND3P61587 244 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 PDCD1Q15116 288 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 SLC25A26Q70HW3 274 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF610Q8N9Z0 462 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 WSB1Q9Y6I7 421 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 A0A087WWC5 75 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF724A8MTY0 619 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 ZIC3O60481 467 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 HSPB1P04792 205 aaKnown RBP9.3□□□□□ -0.92
CCDC40-207ENST00000572253 CLDN15P56746 228 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 CARD18P57730 90 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 MUCL1Q96DR8 90 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 TMEM56Q96MV1 263 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 FOXB1Q99853 325 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 WDR54Q9H977 334 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 LIPGQ9Y5X9 500 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 TMEM56-RWDD3S4R434 201 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 RPL36A-HNRNPH2H7BZ11 118 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 DFFBO76075 338 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 CST7O76096 145 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 HOXA5P20719 270 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 DYNLT3P51808 116 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 RPL23AP62750 156 aaKnown RBP9.3□□□□□ -0.92
CCDC40-207ENST00000572253 IGSF11Q5DX21 431 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 TMEM217Q8N7C4 229 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF611Q8N823 705 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 RNASE11Q8TAA1 199 aaKnown RBP9.3□□□□□ -0.92
CCDC40-207ENST00000572253 SLC7A10Q9NS82 523 aa9.3□□□□□ -0.92
CCDC40-207ENST00000572253 UNC80Q8N2C7 3258 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 PTPRZ1P23471 2315 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 KIR2DS1A0A191URI9 304 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 hCG_38984A0A1B0GV85 526 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 ZNF732B4DXR9 585 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 SRP19P09132 144 aaKnown RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 CTXN2P0C2S0 81 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 VDAC1P21796 283 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 KIR2DS4P43632 304 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FOXO1Q12778 655 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 KIR2DS1Q14954 304 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 ACER2Q5QJU3 275 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 MRPL14Q6P1L8 145 aaKnown RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 DPPA3Q6W0C5 159 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 SELENOHQ8IZQ5 122 aaKnown RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 ALKBH3Q96Q83 286 aaPredicted RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 SRXN1Q9BYN0 137 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 OR2H1Q9GZK4 316 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 GAR1Q9NY12 217 aaKnown RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 DNAH14Q0VDD8 3507 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 SHANK1Q9Y566 2161 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A10PA6NDY2 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A18PA6NE21 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A16PA6NEW6 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A20PA6NIJ5 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A8PA6NJQ4 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A7PA6NKC0 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A22PA8MWA6 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A12PA8MX19 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A5PA8MXJ8 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A23PA8MXZ1 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 SCAF4O95104 1147 aaKnown RBP9.29□□□□□ -0.92
CCDC40-207ENST00000572253 CELA2AP08217 269 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FBP1P09467 338 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A15PP0C7V4 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A13PP0C7W8 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A14PP0C7W9 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 FAM90A24PP0C7X0 464 aa9.29□□□□□ -0.92
CCDC40-207ENST00000572253 PATE4P0C8F1 98 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms