RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SLC22A6Q4U2R8 563 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 PAN3Q58A45 887 aaKnown RBP10.66□□□□□ -0.7
CLK3-224ENST00000568605 RUSC1-AS1Q66K80 236 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 TMEM200BQ69YZ2 307 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 CEACAM19Q7Z692 300 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 PHC2Q8IXK0 858 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 Q8N7P7 452 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 Q8NFD4 153 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 OR10K1Q8NGX5 313 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 NR1H4Q96RI1 486 aaPredicted RBP10.66□□□□□ -0.7
CLK3-224ENST00000568605 CST11Q9H112 138 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 GAL3ST2Q9H3Q3 398 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 GHRLQ9UBU3 117 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 ST3GAL6Q9Y274 331 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 UBE2J1Q9Y385 318 aaPredicted RBP10.66□□□□□ -0.7
CLK3-224ENST00000568605 SF3B6Q9Y3B4 125 aaKnown RBP10.66□□□□□ -0.7
CLK3-224ENST00000568605 FAM96BQ9Y3D0 163 aa10.66□□□□□ -0.7
CLK3-224ENST00000568605 TRGV10A0A0A0MS01 117 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 DNAJC9-AS1A6NH13 148 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 RNASEK-C17orf49H0YIS7 233 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 H3BUI4 141 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 SLC33A1O00400 549 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 NPFFO15130 113 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 PIN1P1O15428 100 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 SC5DO75845 299 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 CLPXO76031 633 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 OR7C1O76099 320 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 VENTXO95231 258 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 PAHP00439 452 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 FBP1P09467 338 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 UCHL1P09936 223 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 CCL3L1P16619 93 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 UBE2E1P51965 193 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 RPS25P62851 125 aaKnown RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 ACTG1P63261 375 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 EMX1Q04741 257 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 ATXN7L3Q14CW9 347 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 TUSC1Q2TAM9 212 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 PIGYQ3MUY2 71 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 KCTD21Q4G0X4 260 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 KRBOX4Q5JUW0 171 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 GLIPR1L1Q6UWM5 242 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 UNQ9370/PRO34162Q6UXP9 181 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 PDZD9Q8IXQ8 264 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 BCL6BQ8N143 479 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 OR4S1Q8NGB4 309 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 TMEM203Q969S6 136 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 SLC25A28Q96A46 364 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 NKX3-1Q99801 234 aaPredicted RBP10.65□□□□□ -0.7
CLK3-224ENST00000568605 C19orf24Q9BVV8 132 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 SPACA1Q9HBV2 294 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 NDUFB11Q9NX14 153 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 LRRC42Q9Y546 428 aa10.65□□□□□ -0.7
CLK3-224ENST00000568605 A0A0G2JK05 382 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 C17orf98A8MV24 154 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 CLDN34H7C241 214 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 CCRL2O00421 344 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 SRMP19623 302 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 PSMB9P28065 219 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 UBA52P62987 128 aaKnown RBP10.64□□□□□ -0.71
CLK3-224ENST00000568605 KLRD1Q13241 179 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 INSL4Q14641 139 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 DEFB112Q30KQ8 113 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 MIDNQ504T8 468 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 FAM27D1Q5T7N8 215 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 Q6P435 159 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 ZNF773Q6PK81 442 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 OR13D1Q8NGV5 346 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 NEK7Q8TDX7 302 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 FAM216AQ8WUB2 273 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 TNFRSF14Q92956 283 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 ZNF48Q96MX3 618 aaPredicted RBP10.64□□□□□ -0.71
CLK3-224ENST00000568605 BARHL1Q9BZE3 327 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 IFT22Q9H7X7 185 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 VCX3AQ9NNX9 186 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 OR6C3Q9NZP0 311 aa10.64□□□□□ -0.71
CLK3-224ENST00000568605 ODAMA1E959 279 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 MEIOCA2RUB1 952 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A10PA6NDY2 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 BTBD17A6NE02 478 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A18PA6NE21 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A16PA6NEW6 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A20PA6NIJ5 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A8PA6NJQ4 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A7PA6NKC0 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A22PA8MWA6 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A12PA8MX19 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A5PA8MXJ8 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A23PA8MXZ1 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 HSPB6O14558 160 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 CRTAPO75718 401 aaPredicted RBP10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A15PP0C7V4 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A13PP0C7W8 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A14PP0C7W9 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 FAM90A24PP0C7X0 464 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 MYL9P24844 172 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 CALRP27797 417 aaKnown RBP10.63□□□□□ -0.71
CLK3-224ENST00000568605 SAA4P35542 130 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 LGALS4P56470 323 aa10.63□□□□□ -0.71
CLK3-224ENST00000568605 SRSF2Q01130 221 aaKnown RBP10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms