RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 VBP1P61758 197 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 VSNL1P62760 191 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 RPL10AP62906 217 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 ACTG1P63261 375 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SARNPP82979 210 aaKnown RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 FMODQ06828 376 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 IFFO1Q0D2I5 559 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 BNIP2Q12982 314 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MED21Q13503 144 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SNCBQ16143 134 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 UAP1Q16222 522 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 TAL2Q16559 108 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 NDUFAF6Q330K2 333 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 PDZD11Q5EBL8 140 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ACTL10Q5JWF8 245 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 LDLRAD2Q5SZI1 272 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 IDNKQ5T6J7 187 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 DUPD1Q68J44 220 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 TTC33Q6PID6 262 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 AHSA2Q719I0 299 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SSX7Q7RTT5 188 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 SSX6Q7RTT6 188 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 STX12Q86Y82 276 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 VKORC1L1Q8N0U8 176 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ORMDL3Q8N138 153 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 TMEM156Q8N614 296 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ZFP62Q8NB50 900 aaPredicted RBP0.89□□□□□ -2.27
VPS35-207ENST00000568191 OR52N1Q8NH53 320 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 OR51A7Q8NH64 312 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ENKURQ8TC29 256 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 DNAJB3Q8WWF6 145 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 RXFP2Q8WXD0 754 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ZNF649Q9BS31 505 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 AGMATQ9BSE5 352 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 COPS4Q9BT78 406 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 DCUN1D5Q9BTE7 237 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 TMBIM4Q9HC24 238 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 PLEKHJ1Q9NW61 149 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 MCUBQ9NWR8 336 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 C1orf109Q9NX04 203 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 USE1Q9NZ43 259 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 VAPAQ9P0L0 249 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 CYB5R1Q9UHQ9 305 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 C3orf18Q9UK00 162 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 FBXL3Q9UKT7 428 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ZNF257Q9Y2Q1 563 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 ABCB11O95342 1321 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 EVC2Q86UK5 1308 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 TTC21AQ8NDW8 1320 aa0.89□□□□□ -2.27
VPS35-207ENST00000568191 NUP153P49790 1475 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 KIAA0232Q92628 1395 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IZUMO1RA6ND01 250 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SMIM23A6NLE4 172 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA8JA6NMD2 632 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 A8MWL6 223 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 HACD1B0YJ81 288 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TMEM114B3SHH9 223 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SEC14L6B5MCN3 397 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA8KD6RF30 607 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 LRRN3E7EW58 273 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA6L19H0YKK7 550 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA8MH3BSY2 632 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 H7C2Y5 167 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ERI3O43414 337 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 GATCO43716 136 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 ENSAO43768 121 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 ALOX12BO75342 701 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RPP14O95059 124 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 DEXIO95424 95 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 PTTG1O95997 202 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 NRASP01111 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 HRASP01112 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 KRASP01116 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 HLA-DRAP01903 254 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ORM1P02763 201 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IFNA6P05013 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 OCM2P0CE71 109 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GOLGA8HP0CJ92 632 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 GIMD1P0DJR0 217 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 LIPCP11150 499 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ZNF7P17097 686 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 HTR1DP28221 377 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 COILP38432 576 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 RPL14P50914 215 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 CEBPGP53567 150 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TAS2R39P59534 338 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RPL31P62899 125 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 PAFAH1B2P68402 229 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 REEP5Q00765 189 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IFITM3Q01628 133 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 RPL18AQ02543 176 aaKnown RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 GLO1Q04760 184 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 FLOT2Q14254 428 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 CASP8Q14790 479 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 ZNHIT3Q15649 155 aaPredicted RBP0.88□□□□□ -2.27
VPS35-207ENST00000568191 ZNF141Q15928 474 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 IMPG1Q17R60 797 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 SLC36A2Q495M3 483 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 DNAL1Q4LDG9 190 aa0.88□□□□□ -2.27
VPS35-207ENST00000568191 TIMM23BQ5SRD1 257 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms