RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 SLC36A1Q7Z2H8 476 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 SCCPDHQ8NBX0 429 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 OR4M1Q8NGD0 313 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 ZNF418Q8TF45 676 aaPredicted RBP11.17□□□□□ -0.62
CLK3-218ENST00000566926 FAM46BQ96A09 425 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 SPACA5Q96QH8 159 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 TMEM59Q9BXS4 323 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 SRRQ9GZT4 340 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 OCEL1Q9H607 264 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 PPP1R3EQ9H7J1 279 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 DNAJB11Q9UBS4 358 aa11.17□□□□□ -0.62
CLK3-218ENST00000566926 IGHV2-70DA0A0C4DH43 119 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 KIR2DS1A0A191URI9 304 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 RNF212BA8MTL3 300 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 J3QT63 122 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 TNFRSF13BO14836 293 aaPredicted RBP11.16□□□□□ -0.62
CLK3-218ENST00000566926 AKR7A2O43488 359 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ENSAO43768 121 aaKnown RBP11.16□□□□□ -0.62
CLK3-218ENST00000566926 UPK1BO75841 260 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ECDO95905 644 aaPredicted RBP11.16□□□□□ -0.62
CLK3-218ENST00000566926 GYPAP02724 150 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 LIPFP07098 398 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 EPHA1P21709 976 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 FPR2P25090 351 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 MPZP25189 248 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 HAAOP46952 286 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 PAX8Q06710 450 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 IL24Q13007 206 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ZNF79Q15937 498 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 SLC22A6Q4U2R8 563 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 PYDC2Q56P42 97 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 CRIP3Q6Q6R5 217 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ZNF841Q6ZN19 808 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A1Q86YD7 464 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 Q8IYB0 196 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 OR56B1Q8NGI3 324 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 C1orf147Q96MC9 270 aaPredicted RBP11.16□□□□□ -0.62
CLK3-218ENST00000566926 DNTTIP1Q9H147 329 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ATG5Q9H1Y0 275 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 OR51I2Q9H344 312 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 OPN4Q9UHM6 478 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 ING4Q9UNL4 249 aa11.16□□□□□ -0.62
CLK3-218ENST00000566926 IGKV1-27A0A075B6S5 117 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A10PA6NDY2 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A18PA6NE21 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A16PA6NEW6 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A20PA6NIJ5 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A8PA6NJQ4 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A7PA6NKC0 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A22PA8MWA6 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A12PA8MX19 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A5PA8MXJ8 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A23PA8MXZ1 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 GPR37O15354 613 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 TMPRSS2O15393 492 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 CRTAPO75718 401 aaPredicted RBP11.15□□□□□ -0.62
CLK3-218ENST00000566926 ACAA1P09110 424 aaPredicted RBP11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A15PP0C7V4 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A13PP0C7W8 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A14PP0C7W9 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 FAM90A24PP0C7X0 464 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 EGR1P18146 543 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 CDK2P24941 298 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 DEFA1P59665 94 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 DEFA3P59666 94 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 RPS27AP62979 156 aaKnown RBP11.15□□□□□ -0.62
CLK3-218ENST00000566926 PAX2Q02962 417 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 UNC119Q13432 240 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 ELP2Q6IA86 826 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 Q8N402 240 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 Q8NFD4 153 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 OR5D18Q8NGL1 313 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 JMJD8Q96S16 334 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 TM2D1Q9BX74 207 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 SUCNR1Q9BXA5 334 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 ELL3Q9HB65 397 aaPredicted RBP11.15□□□□□ -0.62
CLK3-218ENST00000566926 CTSZQ9UBR2 303 aa11.15□□□□□ -0.62
CLK3-218ENST00000566926 IGHV3OR15-7A0A075B7D8 119 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 NKX6-3A6NJ46 265 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 J3QRK9 145 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 SULT1C2O00338 296 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 GSTZ1O43708 216 aaPredicted RBP11.14□□□□□ -0.63
CLK3-218ENST00000566926 MGMTP16455 207 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 GLRA1P23415 457 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 SSBP1Q04837 148 aaKnown RBP11.14□□□□□ -0.63
CLK3-218ENST00000566926 SCN1BQ07699 218 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 NHLRC3Q5JS37 347 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 ATPAF1Q5TC12 328 aaPredicted RBP11.14□□□□□ -0.63
CLK3-218ENST00000566926 TRIQKQ629K1 86 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 SLC25A26Q70HW3 274 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 LINC00596Q86U02 117 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 BPIFB2Q8N4F0 458 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 FAM89BQ8N5H3 189 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 SETD6Q8TBK2 473 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 DEDD2Q8WXF8 326 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 RFT1Q96AA3 541 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 MED30Q96HR3 178 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 DMRTB1Q96MA1 342 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 MDFIQ99750 246 aa11.14□□□□□ -0.63
CLK3-218ENST00000566926 SCPEP1Q9HB40 452 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms