RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CD83Q01151 205 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 SCN1BQ07699 218 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 ALKBH1Q13686 389 aaKnown RBP14.99□□□□□ -0.01
CLN3-218ENST00000565688 TMEM95Q3KNT9 176 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 OR51A4Q8NGJ6 313 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 OR5D18Q8NGL1 313 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 OR10AC1Q8NH08 325 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 PYDC1Q8WXC3 89 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 SGCDQ92629 289 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 C4orf36Q96KX1 117 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 SPACA5Q96QH8 159 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 ZCCHC4Q9H5U6 513 aa14.99□□□□□ -0.01
CLN3-218ENST00000565688 EI24O14681 340 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 DBTP11182 482 aaKnown RBP14.98□□□□□ -0.01
CLN3-218ENST00000565688 ALDH3A2P51648 485 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 PRRX1P54821 245 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 MRPL28Q13084 256 aaKnown RBP14.98□□□□□ -0.01
CLN3-218ENST00000565688 KRBOX4Q5JUW0 171 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 CCDC144NLQ6NUI1 221 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 CENPVQ7Z7K6 275 aaPredicted RBP14.98□□□□□ -0.01
CLN3-218ENST00000565688 SERPINA12Q8IW75 414 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 SYS1Q8N2H4 156 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 OR5D14Q8NGL3 314 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 OR6C3Q9NZP0 311 aa14.98□□□□□ -0.01
CLN3-218ENST00000565688 A0A087X0M5 115 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 A0A1B0GX30 115 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 ZNF729A6NN14 1252 aaPredicted RBP14.97□□□□□ -0.01
CLN3-218ENST00000565688 OOSP1A8MZH6 123 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 E9PQ18 207 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 M0QZK8 103 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 SLC33A1O00400 549 aaPredicted RBP14.97□□□□□ -0.01
CLN3-218ENST00000565688 DEGS1O15121 323 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 OR2F2O95006 317 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 HCKP08631 526 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 TMEM225BP0DP42 221 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 GALEQ14376 348 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 KISS1Q15726 138 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 Q6P435 159 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 BAIAP2L2Q6UXY1 529 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 MRAPQ8TCY5 172 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 LGALS12Q96DT0 336 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 CPNE2Q96FN4 548 aaPredicted RBP14.97□□□□□ -0.01
CLN3-218ENST00000565688 RBM14Q96PK6 669 aaKnown RBP14.97□□□□□ -0.01
CLN3-218ENST00000565688 SLC25A33Q9BSK2 321 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 ALG8Q9BVK2 526 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 ZNF286AQ9HBT8 521 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 MYRFQ9Y2G1 1151 aa14.97□□□□□ -0.01
CLN3-218ENST00000565688 FAM172BPA6NC97 362 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 TMEM212A6NML5 194 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 BUB1B-PAK6H3BSN5 160 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 SULT1B1O43704 296 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 FADS2O95864 444 aaKnown RBP14.96□□□□□ -0.01
CLN3-218ENST00000565688 PF4V1P10720 104 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 CD33P20138 364 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 CD24P25063 80 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 MNDAP41218 407 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 MTNR1BP49286 362 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 LOXL3P58215 753 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 HLA-DRB5Q30154 266 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 ZIK1Q3SY52 487 aaPredicted RBP14.96□□□□□ -0.01
CLN3-218ENST00000565688 ABCA11PQ4W5N1 156 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 TPTE2P1Q5T6R2 138 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 ZFP1Q6P2D0 407 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 PARP16Q8N5Y8 322 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 WFDC9Q8NEX5 89 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 PHF21AQ96BD5 680 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 COQ2Q96H96 371 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 Q96MT0 163 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 PCDHB16Q9NRJ7 776 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 INPP5EQ9NRR6 644 aa14.96□□□□□ -0.01
CLN3-218ENST00000565688 TSSC4Q9Y5U2 329 aaPredicted RBP14.96□□□□□ -0.01
CLN3-218ENST00000565688 KBTBD11-OT1A0A1B0GTJ5 212 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 A0A1W2PRX2 142 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 MPZL2O60487 215 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 LPLP06858 475 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 CCDC159P0C7I6 412 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 GDNFP39905 211 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 ZP1P60852 638 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 ATXN7L3Q14CW9 347 aaPredicted RBP14.95□□□□□ -0.02
CLN3-218ENST00000565688 CDK5R1Q15078 307 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 RNF144BQ7Z419 303 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 LHFPL3Q86UP9 236 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 ZNF565Q8N9K5 539 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 OR4X2Q8NGF9 303 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 HAVCR2Q8TDQ0 301 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 NCOR1P1Q9H4R4 102 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 GMPPBQ9Y5P6 360 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 KIAA2026Q5HYC2 2103 aa14.95□□□□□ -0.02
CLN3-218ENST00000565688 TCRBV4S1A1TA0A5B7 111 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 LY6LH3BQJ8 138 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 ZFPL1O95159 310 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 FAM106CPP0CH98 169 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 GABRB1P18505 474 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 RBM39Q14498 530 aaKnown RBP14.94□□□□□ -0.02
CLN3-218ENST00000565688 ZNF691Q5VV52 312 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 ELP2Q6IA86 826 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 CBR4Q8N4T8 237 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 OR51T1Q8NGJ9 327 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 OR9G1Q8NH87 305 aa14.94□□□□□ -0.02
CLN3-218ENST00000565688 OR5AK2Q8NH90 309 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms