RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 OR2G3Q8NGZ4 309 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 THRSPQ92748 146 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 PTX4Q96A99 478 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 TBL1XR1Q9BZK7 514 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 LRFN1Q9P244 771 aa11.59□□□□□ -0.55
CLK3-206ENST00000562078 C20orf202A1L168 122 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 ZNF705FA8MVS1 300 aaPredicted RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 ZNF705DP0CH99 300 aaPredicted RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 ZNF705BP0CI00 300 aaPredicted RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 CHRNB4P30926 498 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 RBMXP38159 391 aaKnown RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 PDLIM4P50479 330 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 CTXN1P60606 82 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 VAX1Q5SQQ9 334 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 C1orf100Q5SVJ3 147 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 RHBDD2Q6NTF9 364 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 NUFIP2Q7Z417 695 aaKnown RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 SLC26A10Q8NG04 563 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 OR1L6Q8NGR2 347 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 OR6C1Q96RD1 312 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 SRD5A3Q9H8P0 318 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.58□□□□□ -0.56
CLK3-206ENST00000562078 AK3Q9UIJ7 227 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 SLC5A6Q9Y289 635 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 HIF3AQ9Y2N7 669 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 EML6Q6ZMW3 1958 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 B4DEV8 164 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 E5RGE8 158 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 CYB5R3P00387 301 aaPredicted RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 VSIG8P0DPA2 414 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 FSTP19883 344 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 NOVA1P51513 510 aaKnown RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 ZFP36L1Q07352 338 aaKnown RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 ALG10Q5BKT4 473 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 VHLLQ6RSH7 139 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 GBGT1Q8N5D6 347 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 NECAP1Q8NC96 275 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 RHBDD1Q8TEB9 315 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 TMEM37Q8WXS4 190 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 SDSLQ96GA7 329 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 OR8B4Q96RC9 309 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 TBX15Q96SF7 602 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 GPX7Q96SL4 187 aaPredicted RBP11.58□□□□□ -0.56
CLK3-206ENST00000562078 C1orf123Q9NWV4 160 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 NSG2Q9Y328 171 aa11.58□□□□□ -0.56
CLK3-206ENST00000562078 ZNF318Q5VUA4 2279 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 IGHV5-10-1A0A0J9YXX1 117 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 TRDCB7Z8K6 153 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 WISP1O95388 367 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 HLA-DQA2P01906 255 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 UMODP07911 640 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 SLC6A8P48029 635 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 PTTG1IPP53801 180 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 RAB11AP62491 216 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 RPL23AP62750 156 aaKnown RBP11.57□□□□□ -0.56
CLK3-206ENST00000562078 CLEC12BQ2HXU8 276 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 ZNF506Q5JVG8 444 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 PLA2G2CQ5R387 149 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 CFAP161Q6P656 301 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 C16orf47Q6ZP98 133 aaPredicted RBP11.57□□□□□ -0.56
CLK3-206ENST00000562078 MRPL52Q86TS9 123 aaKnown RBP11.57□□□□□ -0.56
CLK3-206ENST00000562078 LYPD6Q86Y78 171 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 OR5H2Q8NGV7 314 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 OTOSQ8NHW6 89 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 FGGYQ96C11 551 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 TMEM242Q9NWH2 141 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 B3GAT1Q9P2W7 334 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 LAMP3Q9UQV4 416 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 FREM3P0C091 2139 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 GPR179Q6PRD1 2367 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 FIGNL2A6NMB9 653 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 ALG1L2C9J202 215 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 GPR137BO60478 399 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 OPN1MWP04001 364 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 ASAH2BP0C7U1 165 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 ZNF883P0CG24 379 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 OPN1MW2P0DN77 364 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 OPN1MW3P0DN78 364 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 CD33P20138 364 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 CCKARP32238 428 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 RPL18Q07020 188 aaKnown RBP11.57□□□□□ -0.56
CLK3-206ENST00000562078 TAF9Q16594 264 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 FDX2Q6P4F2 183 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 ZNF441Q8N8Z8 693 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 SNIP1Q8TAD8 396 aaKnown RBP11.57□□□□□ -0.56
CLK3-206ENST00000562078 MIEN1Q9BRT3 115 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 MSL2Q9HCI7 577 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 TMEM14AQ9Y6G1 99 aa11.57□□□□□ -0.56
CLK3-206ENST00000562078 WDFY3Q8IZQ1 3526 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 NKX6-3A6NJ46 265 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 RAD51DO75771 328 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 GSTP1P09211 210 aaKnown RBP11.56□□□□□ -0.56
CLK3-206ENST00000562078 OR10J1P30954 320 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 ERVS71-1P61550 626 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 SELENOTP62341 195 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 QRFPP83859 136 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 PLAC9Q5JTB6 97 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 COL5A1-AS1Q5SY13 56 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 CDCP2Q5VXM1 449 aa11.56□□□□□ -0.56
CLK3-206ENST00000562078 LHFPL1Q86WI0 220 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms