RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 SAXO1Q8IYX7 474 aa13□□□□□ -0.33
CLN3-208ENST00000561505 CAPSLQ8WWF8 208 aa13□□□□□ -0.33
CLN3-208ENST00000561505 SPSB1Q96BD6 273 aa13□□□□□ -0.33
CLN3-208ENST00000561505 IL4I1Q96RQ9 567 aa13□□□□□ -0.33
CLN3-208ENST00000561505 EXOSC4Q9NPD3 245 aaKnown RBP13□□□□□ -0.33
CLN3-208ENST00000561505 POMPQ9Y244 141 aa13□□□□□ -0.33
CLN3-208ENST00000561505 PSMB11A5LHX3 300 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 SH2D7A6NKC9 451 aaPredicted RBP12.99□□□□□ -0.33
CLN3-208ENST00000561505 ZNF729A6NN14 1252 aaPredicted RBP12.99□□□□□ -0.33
CLN3-208ENST00000561505 H0YHG0 523 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 CYB5AP00167 134 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 PRRX1P54821 245 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 PAX5Q02548 391 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 CD69Q07108 199 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 AESQ08117 197 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 KIAA2026Q5HYC2 2103 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 TMEM244Q5VVB8 128 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 OR2W3Q7Z3T1 314 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 RDH10Q8IZV5 341 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 CHST4Q8NCG5 386 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 OR51D1Q8NGF3 324 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 OR2G2Q8NGZ5 317 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 ADI1Q9BV57 179 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 GABARAPL1Q9H0R8 117 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 PCDHB16Q9NRJ7 776 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 KRT84Q9NSB2 600 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 MOB4Q9Y3A3 225 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 HSPE1-MOB4S4R3N1 261 aa12.99□□□□□ -0.33
CLN3-208ENST00000561505 H3BSH0 61 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 SIRPB1O00241 398 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 FGF16O43320 207 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 IGHG2P01859 326 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 NHLRC4P0CG21 123 aaPredicted RBP12.98□□□□□ -0.33
CLN3-208ENST00000561505 FAM106CPP0CH98 169 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 MNDAP41218 407 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 PTGFRP43088 359 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 ZNF85Q03923 595 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 EBI3Q14213 229 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 CDK5R1Q15078 307 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 RNF144BQ7Z419 303 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 COMMD1Q8N668 190 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 CCDC197Q8NCU1 140 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 OR9G1Q8NH87 305 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 CHPT1Q8WUD6 406 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 DPF1Q92782 380 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 SLC7A6OSQ96CW6 309 aaPredicted RBP12.98□□□□□ -0.33
CLN3-208ENST00000561505 KIRREL1Q96J84 757 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 TBX5Q99593 518 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 FRRS1LQ9P0K9 344 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 ZMAT5Q9UDW3 170 aaKnown RBP12.98□□□□□ -0.33
CLN3-208ENST00000561505 GSTK1Q9Y2Q3 226 aa12.98□□□□□ -0.33
CLN3-208ENST00000561505 LSM4Q9Y4Z0 139 aaKnown RBP12.98□□□□□ -0.33
CLN3-208ENST00000561505 STAB2Q8WWQ8 2551 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 KBTBD11-OT1A0A1B0GTJ5 212 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 A0A1W2PPI3 338 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 J3QRE1 110 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 SLC33A1O00400 549 aaPredicted RBP12.97□□□□□ -0.33
CLN3-208ENST00000561505 TOR1AO14656 332 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 CALCBP10092 127 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 POU3F4P49335 361 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 CCR9P51686 369 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 KPNB1Q14974 876 aaKnown RBP12.97□□□□□ -0.33
CLN3-208ENST00000561505 ATP6AP1Q15904 470 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 KCTD20Q7Z5Y7 419 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 C5orf56Q8N8D9 126 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 OR4D6Q8NGJ1 314 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 OR51T1Q8NGJ9 327 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 OR8J1Q8NGP2 316 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 BCAS4Q8TDM0 211 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 FGGYQ96C11 551 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 OPALINQ96PE5 141 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 OR6C3Q9NZP0 311 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 ENOPH1Q9UHY7 261 aa12.97□□□□□ -0.33
CLN3-208ENST00000561505 NPIPB11E5RHQ5 1161 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 G3V2T6 193 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 J3QR06 171 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 OR3A4PP47883 348 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 NANOS3P60323 173 aaKnown RBP12.96□□□□□ -0.33
CLN3-208ENST00000561505 DNAL1Q4LDG9 190 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 SLC16A12Q6ZSM3 486 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 C18orf65Q6ZTR6 163 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 ZNF329Q86UD4 541 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 Q8NFD4 153 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 EME1Q96AY2 570 aa12.96□□□□□ -0.33
CLN3-208ENST00000561505 FAM172BPA6NC97 362 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 RAMP3O60896 148 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 SNRNP70P08621 437 aaKnown RBP12.95□□□□□ -0.34
CLN3-208ENST00000561505 POLR2IP36954 125 aaKnown RBP12.95□□□□□ -0.34
CLN3-208ENST00000561505 GP2P55259 537 aaKnown RBP12.95□□□□□ -0.34
CLN3-208ENST00000561505 ZP1P60852 638 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 KRBOX4Q5JUW0 171 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 ELP2Q6IA86 826 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 OR8H3Q8N146 312 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 RNF152Q8N8N0 203 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 OR10A7Q8NGE5 316 aa12.95□□□□□ -0.34
CLN3-208ENST00000561505 PPIL3Q9H2H8 161 aaKnown RBP12.95□□□□□ -0.34
CLN3-208ENST00000561505 APOL3O95236 402 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 SNU13P55769 128 aaKnown RBP12.94□□□□□ -0.34
CLN3-208ENST00000561505 DGCR2P98153 550 aa12.94□□□□□ -0.34
CLN3-208ENST00000561505 TP53I3Q53FA7 332 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms