RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 WFDC9Q8NEX5 89 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 OR13C3Q8NGS6 347 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 ZNF596Q8TC21 504 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 CORO2AQ92828 525 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 STMN2Q93045 179 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 SPSB1Q96BD6 273 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 PELI1Q96FA3 418 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 COQ2Q96H96 371 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 SLC25A33Q9BSK2 321 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 COMMD4Q9H0A8 199 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 GAL3ST2Q9H3Q3 398 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 NEK6Q9HC98 313 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 IMPAD1Q9NX62 359 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 FAM53CQ9NYF3 392 aa9.28□□□□□ -0.92
USP3-220ENST00000561381 TCRBV4S1A1TA0A5B7 111 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 ODAMA1E959 279 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 OR4C45A6NMZ5 311 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 J3QLW9 94 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 SLC33A1O00400 549 aaPredicted RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 ALX3O95076 343 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 HTR1AP08908 422 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 OCM2P0CE71 109 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 OCMP0CE72 109 aaPredicted RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 PF4V1P10720 104 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 ZNF19P17023 458 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 CD34P28906 385 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 BRS3P32247 399 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 RBM39Q14498 530 aaKnown RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 KPNB1Q14974 876 aaKnown RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 ATXN7L3Q14CW9 347 aaPredicted RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 C17orf58Q2M2W7 97 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 HLA-DRB5Q30154 266 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 ZIK1Q3SY52 487 aaPredicted RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 KRBOX4Q5JUW0 171 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 OR52W1Q6IF63 320 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 RTN4RL2Q86UN3 420 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 PYDC1Q8WXC3 89 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 MYDGFQ969H8 173 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 C4orf36Q96KX1 117 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 RBM14Q96PK6 669 aaKnown RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 PPIL3Q9H2H8 161 aaKnown RBP9.27□□□□□ -0.93
USP3-220ENST00000561381 LIN7BQ9HAP6 207 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 TAS2R3Q9NYW6 316 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 HHLA2Q9UM44 414 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 DNAH3Q8TD57 4116 aa9.27□□□□□ -0.93
USP3-220ENST00000561381 LEUTXA8MZ59 168 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 E9PQ18 207 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 LY6LH3BQJ8 138 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 BUB1B-PAK6H3BSN5 160 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 HSPB6O14558 160 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 EI24O14681 340 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 OR2F2O95006 317 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 MPIG6BO95866 241 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 IGHV3-7P01780 117 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 MT-ND2P03891 347 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 ALPLP05186 524 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 CSN2P05814 226 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 PTGFRP43088 359 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 OR3A4PP47883 348 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 CCR9P51686 369 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 ZP1P60852 638 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 SNRPGP62308 76 aaKnown RBP9.26□□□□□ -0.93
USP3-220ENST00000561381 ALKBH1Q13686 389 aaKnown RBP9.26□□□□□ -0.93
USP3-220ENST00000561381 CDK5R1Q15078 307 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 TPTE2P1Q5T6R2 138 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 C16orf82Q7Z2V1 217 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 KCTD20Q7Z5Y7 419 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 ACBD7Q8N6N7 88 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 CAPSLQ8WWF8 208 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 TRUB1Q8WWH5 349 aaKnown RBP9.26□□□□□ -0.93
USP3-220ENST00000561381 LEAP2Q969E1 77 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 HRASLS5Q96KN8 279 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 ZCCHC4Q9H5U6 513 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 ISG20L2Q9H9L3 353 aaKnown RBP9.26□□□□□ -0.93
USP3-220ENST00000561381 MYRFQ9Y2G1 1151 aa9.26□□□□□ -0.93
USP3-220ENST00000561381 TSSC4Q9Y5U2 329 aaPredicted RBP9.26□□□□□ -0.93
USP3-220ENST00000561381 A0A087X0M5 115 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 A0A1B0GX30 115 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 FUOMA2VDF0 154 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 E9PI62 339 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 H3BUI4 141 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 K7EIL1 84 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 DYNC1I1O14576 645 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 TOR1AO14656 332 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 DEGS1O15121 323 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 PF4P02776 101 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 CGB3P0DN86 165 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 CGB7P0DN87 165 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 TMEM225BP0DP42 221 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 NFYBP25208 207 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 RASSF2P50749 326 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 KHDC1LQ5JSQ8 128 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 C9orf152Q5JTZ5 239 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 SLC25A30Q5SVS4 291 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 XP32Q5T750 250 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 LPCAT4Q643R3 524 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 LHFPL3Q86UP9 236 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 SAXO1Q8IYX7 474 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 OR4D6Q8NGJ1 314 aa9.25□□□□□ -0.93
USP3-220ENST00000561381 LGALS12Q96DT0 336 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms