RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HLA-GP17693 338 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 MPV17P39210 176 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 DHODHQ02127 395 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 PDCD1Q15116 288 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 BRICD5Q6PL45 260 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 Q6ZS49 121 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 COQ8AQ8NI60 647 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 CASTOR1Q8WTX7 329 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 CYYR1Q96J86 154 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 PDCD10Q9BUL8 212 aa14.34□□□□□ -0.11
LDLR-206ENST00000557958 TLN1Q9Y490 2541 aaKnown RBP14.34□□□□□ -0.11
LDLR-206ENST00000557958 IGKV1D-8A0A087WSZ0 117 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 OR5H14A6NHG9 310 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 F8VVB4 439 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 F8VWA3 439 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 SIX6O95475 246 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 CRYAAP02489 173 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 NAAAQ02083 359 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 DHRS11Q6UWP2 260 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 MRGPRGQ86SM5 289 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 SCCPDHQ8NBX0 429 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 DYRK2Q92630 601 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 CXXC4Q9H2H0 198 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 MEMO1Q9Y316 297 aa14.33□□□□□ -0.11
LDLR-206ENST00000557958 A0A0B4J2A0 478 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 KIR2DS1A0A191URI9 304 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 TSC22D2O75157 780 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 SFT2D2O95562 160 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 M6PRP20645 277 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 KIR2DS4P43632 304 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 ZNF81P51508 661 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 KIR2DS1Q14954 304 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 DAZAP2Q15038 168 aaPredicted RBP14.33□□□□□ -0.12
LDLR-206ENST00000557958 C2orf68Q2NKX9 166 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 RGS7BPQ6MZT1 257 aaPredicted RBP14.33□□□□□ -0.12
LDLR-206ENST00000557958 SUN5Q8TC36 379 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 VKORC1Q9BQB6 163 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 DECR2Q9NUI1 292 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 COMMD9Q9P000 198 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 SHPKQ9UHJ6 478 aa14.33□□□□□ -0.12
LDLR-206ENST00000557958 ATRXP46100 2492 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 FAM221AA4D161 298 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 POM121CA8CG34 1229 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 A8MXE2 369 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 G3V3Q6 166 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 IFNA7P01567 189 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 CTSDP07339 412 aaPredicted RBP14.32□□□□□ -0.12
LDLR-206ENST00000557958 ACAA1P09110 424 aaPredicted RBP14.32□□□□□ -0.12
LDLR-206ENST00000557958 CA7P43166 264 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 ZNF83P51522 516 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 FAM27E3Q08E93 113 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 ZNF154Q13106 437 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 BAMBIQ13145 260 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 SSX8Q7RTT4 187 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 RTBDNQ9BSG5 229 aaPredicted RBP14.32□□□□□ -0.12
LDLR-206ENST00000557958 ACACBO00763 2458 aa14.32□□□□□ -0.12
LDLR-206ENST00000557958 INTS1Q8N201 2190 aaKnown RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 HMSDA8MTL9 139 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 H7C1Q1 480 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 M0R1B8 84 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 RHBDL1O75783 438 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 NAPSAO96009 420 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 NFYAP23511 347 aaPredicted RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 MDH2P40926 338 aaKnown RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 RPS23P62266 143 aaKnown RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 SRSF4Q08170 494 aaKnown RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 ALKBH6Q3KRA9 238 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 TOR2AQ5JU69 321 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 SPIN3Q5JUX0 258 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 CLLU1Q5K131 121 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 DCAF12L2Q5VW00 463 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 SUMF2Q8NBJ7 301 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 PRR7Q8TB68 274 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 WDR13Q9H1Z4 485 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 ELOVL5Q9NYP7 299 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 TUBAL3A6NHL2 446 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 DEGS1O15121 323 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 NXPH2O95156 264 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 CTXN2P0C2S0 81 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 PGA5P0DJD9 388 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 ZNF728P0DKX0 622 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 ZNF44P15621 663 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 FABP6P51161 128 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 CYCSP99999 105 aaKnown RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 LY6G6FQ5SQ64 297 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 ZNF660Q6AZW8 331 aaPredicted RBP14.31□□□□□ -0.12
LDLR-206ENST00000557958 KCTD9Q7L273 389 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 WDR86Q86TI4 376 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 SGPP2Q8IWX5 399 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 TMEM230Q96A57 120 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 ZNF488Q96MN9 340 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 NRIP2Q9BQI9 281 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 IL36RNQ9UBH0 155 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 GLS2Q9UI32 602 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 PKD1L2Q7Z442 2459 aa14.31□□□□□ -0.12
LDLR-206ENST00000557958 RPS10-NUDT3A0A1W2PQS6 291 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 PLSCR5A0PG75 271 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 CDIPTO14735 213 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 CD8AP01732 235 aa14.3□□□□□ -0.12
LDLR-206ENST00000557958 GRPP07492 148 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms