RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SCRG1O75711 98 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 IFNA17P01571 189 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BJP06899 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 PRF1P14222 555 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BOP23527 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 GNRHRP30968 328 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BBP33778 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 GPX4P36969 197 aaPredicted RBP10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BDP58876 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HERV-K104P61576 105 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BCP62807 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 ZXDAP98168 799 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST2H2BEQ16778 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 RNF212Q495C1 297 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.67□□□□□ -0.7
LDLR-205ENST00000557933 SLC25A24Q6NUK1 477 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 LIAT1Q6ZQX7 453 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 VASH2Q86V25 355 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 PLXDC1Q8IUK5 500 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 NFAM1Q8NET5 270 aaPredicted RBP10.67□□□□□ -0.7
LDLR-205ENST00000557933 OR5T1Q8NG75 326 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BHQ93079 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 INTS12Q96CB8 462 aaKnown RBP10.67□□□□□ -0.7
LDLR-205ENST00000557933 RASL10BQ96S79 203 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BNQ99877 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 HIST1H2BMQ99879 126 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 RSG1Q9BU20 258 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 CEP250Q9BV73 2442 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 DEFB126Q9BYW3 111 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 VSIRQ9H7M9 311 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 CRLF2Q9HC73 371 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 SLC7A10Q9NS82 523 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 CRIM1Q9NZV1 1036 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 CACNA1GO43497 2377 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 WRBO00258 174 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 CCL3P10147 92 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 DEFA4P12838 97 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 AFF3P51826 1226 aaKnown RBP10.67□□□□□ -0.7
LDLR-205ENST00000557933 SLC25A26Q70HW3 274 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 GJC3Q8NFK1 279 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 OR2M3Q8NG83 312 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 OR1K1Q8NGR3 316 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 OR6X1Q8NH79 312 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 RHBDD1Q8TEB9 315 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 MUCL1Q96DR8 90 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 OXGR1Q96P68 337 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 METTL9Q9H1A3 318 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 MOB1AQ9H8S9 216 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 USF3Q68DE3 2245 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 DMXL2Q8TDJ6 3036 aa10.67□□□□□ -0.7
LDLR-205ENST00000557933 IGKV1D-13A0A0B4J2D9 117 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 ZNF587BE7ETH6 402 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 PROB1E7EW31 1015 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 K7N7A8 449 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 CD55P08174 381 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 SCTP09683 121 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 SEC11BP0C7V7 166 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 IGKV1-13P0DP09 117 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 NKX2-1P43699 371 aaPredicted RBP10.66□□□□□ -0.7
LDLR-205ENST00000557933 HTR5AP47898 357 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 HNRNPKP61978 463 aaKnown RBP eCLIP10.66□□□□□ -0.74e-6■■■■□ 21.9
LDLR-205ENST00000557933 DEFA6Q01524 100 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 SPSB3Q6PJ21 355 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 YRDCQ86U90 279 aaKnown RBP10.66□□□□□ -0.7
LDLR-205ENST00000557933 LYPD6BQ8NI32 183 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 BOD1Q96IK1 185 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 ZNF488Q96MN9 340 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 PBDC1Q9BVG4 233 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 TUBA4BQ9H853 241 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 PLEKHA2Q9HB19 425 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 A0A1W2PR77 199 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 SCAF4O95104 1147 aaKnown RBP10.66□□□□□ -0.7
LDLR-205ENST00000557933 ELOBQ15370 118 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 KHDC3LQ587J8 217 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 PLCXD3Q63HM9 321 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 OR2T2Q6IF00 324 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 ZNF695Q8IW36 515 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 LGI3Q8N145 548 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 D2HGDHQ8N465 521 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 POM121Q96HA1 1249 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 MRGPRX4Q96LA9 322 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 TAAR9Q96RI9 348 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 GINS3Q9BRX5 216 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 ZNF665Q9H7R5 613 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 GAR1Q9NY12 217 aaKnown RBP10.66□□□□□ -0.7
LDLR-205ENST00000557933 WSB1Q9Y6I7 421 aa10.66□□□□□ -0.7
LDLR-205ENST00000557933 K7ESF4 209 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 PIAS2O75928 621 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 IAPPP10997 89 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 RPL23AP62750 156 aaKnown RBP10.65□□□□□ -0.7
LDLR-205ENST00000557933 GRB2P62993 217 aaKnown RBP10.65□□□□□ -0.7
LDLR-205ENST00000557933 TBC1D26Q86UD7 250 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 THNSL2Q86YJ6 484 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 GAPTQ8N292 157 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 FRZBQ92765 325 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 A0A1W2PNV4 684 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 DHHO43323 396 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 GALR2O43603 387 aaPredicted RBP10.65□□□□□ -0.7
LDLR-205ENST00000557933 PGA5P0DJD9 388 aa10.65□□□□□ -0.7
LDLR-205ENST00000557933 TDGF1P13385 188 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms