RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 CSN2P05814 226 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 FASP25445 335 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 PRRX1P54821 245 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 NANOS3P60323 173 aaKnown RBP12.67□□□□□ -0.38
SCFD1-224ENST00000557713 C17orf58Q2M2W7 97 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 C11orf87Q6NUJ2 197 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 FDX2Q6P4F2 183 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 FAM220AQ7Z4H9 259 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 AMIGO2Q86SJ2 522 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 RFT1Q96AA3 541 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 COQ2Q96H96 371 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 OPALINQ96PE5 141 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 RHOFQ9HBH0 211 aa12.67□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A18PA6NE21 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A16PA6NEW6 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A20PA6NIJ5 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A9PA6NNJ1 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A12PA8MX19 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A5PA8MXJ8 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 OOSP1A8MZH6 123 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 J3QRE1 110 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 M0QZK8 103 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A15PP0C7V4 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A13PP0C7W8 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A14PP0C7W9 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 FAM90A24PP0C7X0 464 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 CGB3P0DN86 165 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 CGB7P0DN87 165 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 ZNF20P17024 532 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 PTGFRP43088 359 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 SCN1BQ07699 218 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 KCTD20Q7Z5Y7 419 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 THNSL2Q86YJ6 484 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 SAXO1Q8IYX7 474 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 OSR2Q8N2R0 312 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 OR4D6Q8NGJ1 314 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 RFKQ969G6 155 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 GABARAPL3Q9BY60 117 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 AP4S1Q9Y587 144 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 PCDHGB5Q9Y5G0 923 aa12.66□□□□□ -0.38
SCFD1-224ENST00000557713 ZNF729A6NN14 1252 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-224ENST00000557713 SLC33A1O00400 549 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-224ENST00000557713 CLIC3O95833 236 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 ZNF44P15621 663 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 HOXD3P31249 432 aaPredicted RBP12.65□□□□□ -0.38
SCFD1-224ENST00000557713 MNDAP41218 407 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 OR3A4PP47883 348 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 CCR9P51686 369 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 CDK5R1Q15078 307 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 C9orf152Q5JTZ5 239 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 KRBOX4Q5JUW0 171 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 CCDC144NLQ6NUI1 221 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 ETV3LQ6ZN32 361 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 MRPL41Q8IXM3 137 aaKnown RBP12.65□□□□□ -0.38
SCFD1-224ENST00000557713 CHST4Q8NCG5 386 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 OR51A4Q8NGJ6 313 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 OR10AC1Q8NH08 325 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 SPACA5Q96QH8 159 aa12.65□□□□□ -0.38
SCFD1-224ENST00000557713 RYR3Q15413 4870 aa12.65□□□□□ -0.39
SCFD1-224ENST00000557713 KBTBD11-OT1A0A1B0GTJ5 212 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 PSMB11A5LHX3 300 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 DEGS1O15121 323 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 FAM106CPP0CH98 169 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 KHDC1LQ5JSQ8 128 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 OR5D18Q8NGL1 313 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 OR13C9Q8NGT0 318 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 OR9G1Q8NH87 305 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 KIRREL1Q96J84 757 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 OSBPL10Q9BXB5 764 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 PPIL3Q9H2H8 161 aaKnown RBP12.64□□□□□ -0.39
SCFD1-224ENST00000557713 RIBC2Q9H4K1 309 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.64□□□□□ -0.39
SCFD1-224ENST00000557713 ING3Q9NXR8 418 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 MOB4Q9Y3A3 225 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 HSPE1-MOB4S4R3N1 261 aa12.64□□□□□ -0.39
SCFD1-224ENST00000557713 OR4C45A6NMZ5 311 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 SLC16A6O15403 523 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 HTR1AP08908 422 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 OCM2P0CE71 109 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 OCMP0CE72 109 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-224ENST00000557713 NFYBP25208 207 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 THBS3P49746 956 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 RBM39Q14498 530 aaKnown RBP12.63□□□□□ -0.39
SCFD1-224ENST00000557713 ATXN7L3Q14CW9 347 aaPredicted RBP12.63□□□□□ -0.39
SCFD1-224ENST00000557713 ZNF329Q86UD4 541 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 OR13C3Q8NGS6 347 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 TRUB1Q8WWH5 349 aaKnown RBP12.63□□□□□ -0.39
SCFD1-224ENST00000557713 HRASLS5Q96KN8 279 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 GPR61Q9BZJ8 451 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 ZCCHC4Q9H5U6 513 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 OR6C3Q9NZP0 311 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 MYRFQ9Y2G1 1151 aa12.63□□□□□ -0.39
SCFD1-224ENST00000557713 DAPL1A0PJW8 107 aa12.62□□□□□ -0.39
SCFD1-224ENST00000557713 J3QR06 171 aa12.62□□□□□ -0.39
SCFD1-224ENST00000557713 SNRNP70P08621 437 aaKnown RBP12.62□□□□□ -0.39
SCFD1-224ENST00000557713 FCGR1AP12314 374 aa12.62□□□□□ -0.39
SCFD1-224ENST00000557713 ZP1P60852 638 aa12.62□□□□□ -0.39
SCFD1-224ENST00000557713 RPL23AP62750 156 aaKnown RBP12.62□□□□□ -0.39
SCFD1-224ENST00000557713 SLC25A30Q5SVS4 291 aa12.62□□□□□ -0.39
SCFD1-224ENST00000557713 ZNF565Q8N9K5 539 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms