RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ST3GAL6Q9Y274 331 aa11.17□□□□□ -0.62
SHMT2-228ENST00000557302 A0A087WXM4 84 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 CENPVL3A0A0U1RRI6 287 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 TRDV1A0A1B0GX56 115 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 A0A1W2PP11 408 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 hADV38S2A0JD32 116 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 FUOMA2VDF0 154 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 TCF21O43680 179 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 OR7C1O76099 320 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-228ENST00000557302 UBBP0CG47 229 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 ERP29P30040 261 aaKnown RBP11.16□□□□□ -0.62
SHMT2-228ENST00000557302 P2RX3P56373 397 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 BPIFB3P59826 476 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF273Q14593 569 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 PAN3Q58A45 887 aaKnown RBP11.16□□□□□ -0.62
SHMT2-228ENST00000557302 C1orf100Q5SVJ3 147 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 C9orf139Q6ZV77 190 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 LINC00596Q86U02 117 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 TPRX1Q8N7U7 411 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 TSPAN14Q8NG11 270 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 C1orf147Q96MC9 270 aaPredicted RBP11.16□□□□□ -0.62
SHMT2-228ENST00000557302 SUCNR1Q9BXA5 334 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 CST11Q9H112 138 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 VCX3AQ9NNX9 186 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 GHRLQ9UBU3 117 aa11.16□□□□□ -0.62
SHMT2-228ENST00000557302 TRAV24A0A0B4J272 114 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 IGHV1-69DA0A0B4J2H0 117 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 hCG_1809904A0A1W2PP81 198 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 A0A1W2PPE2 198 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 A0A1W2PR64 198 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 A0A1W2PRV1 198 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 HSPB6O14558 160 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 GEMIN2O14893 280 aaKnown RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 CRTAPO75718 401 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 IGHV1-69P01742 117 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 CSN2P05814 226 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 CCL3L1P16619 93 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 GALP22466 123 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 PRTN3P24158 256 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 MYL9P24844 172 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 HTR2CP28335 458 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 GUCA2AQ02747 115 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 MPV17LQ2QL34 196 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 SYT6Q5T7P8 510 aaPredicted RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 NCR3LG1Q68D85 454 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 RBMS3Q6XE24 437 aaKnown RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 BRD3OSQ6XYD6 125 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 PDZD9Q8IXQ8 264 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 OR6M1Q8NGM8 313 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 MRPS24Q96EL2 167 aaKnown RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 ZNF696Q9H7X3 374 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 IFT22Q9H7X7 185 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 UNKLQ9H9P5 680 aaKnown RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 PLGRKTQ9HBL7 147 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 STUB1Q9UNE7 303 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 AK6Q9Y3D8 172 aaKnown RBP11.15□□□□□ -0.62
SHMT2-228ENST00000557302 LINC00312Q9Y6C7 94 aa11.15□□□□□ -0.62
SHMT2-228ENST00000557302 A0A0A6YYJ9 748 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 TRAV1-2A0A0B4J238 106 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 MEX3AA1L020 520 aaKnown RBP11.14□□□□□ -0.63
SHMT2-228ENST00000557302 SLC22A1O15245 554 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF728P0DKX0 622 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 CD37P11049 281 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 MGMTP16455 207 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 KCNJ3P48549 501 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 PSMD7P51665 324 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 AESQ08117 197 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 ATXN7L3Q14CW9 347 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-228ENST00000557302 TAF9Q16594 264 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 KRBOX4Q5JUW0 171 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 RUSC1-AS1Q66K80 236 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 C22orf42Q6IC83 251 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 METAP1DQ6UB28 335 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-228ENST00000557302 USP43Q70EL4 1123 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 TRAPPC6BQ86SZ2 158 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 BCL6BQ8N143 479 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-228ENST00000557302 SUMF2Q8NBJ7 301 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 TMEM104Q8NE00 496 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 TNFRSF14Q92956 283 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 ZNF714Q96N38 554 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 GFI1Q99684 422 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 DPCDQ9BVM2 203 aaPredicted RBP11.14□□□□□ -0.63
SHMT2-228ENST00000557302 SELENOIQ9C0D9 397 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 BANF2Q9H503 90 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 ING3Q9NXR8 418 aa11.14□□□□□ -0.63
SHMT2-228ENST00000557302 CUBNO60494 3623 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 TRGV10A0A0A0MS01 117 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 ODAMA1E959 279 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 C17orf98A8MV24 154 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 RNASEK-C17orf49H0YIS7 233 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 SLC17A2O00624 439 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 PDCD5O14737 125 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 RBP4P02753 201 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 GLIPR1P48060 266 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 DLX1P56177 255 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 DLX6P56179 175 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 HILS1P60008 231 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 ERVFRD-1P60508 538 aa11.13□□□□□ -0.63
SHMT2-228ENST00000557302 PRB3Q04118 309 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-228ENST00000557302 KLRD1Q13241 179 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms