RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 ZNF230Q9UIE0 474 aaPredicted RBP1.26□□□□□ -2.21
SCFD1-218ENST00000556256 NXT1Q9UKK6 140 aaKnown RBP1.26□□□□□ -2.21
SCFD1-218ENST00000556256 TRAPPC1Q9Y5R8 145 aa1.26□□□□□ -2.21
SCFD1-218ENST00000556256 ADAMTSL3P82987 1691 aa1.26□□□□□ -2.21
SCFD1-218ENST00000556256 ATRNO75882 1429 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 SSH2Q76I76 1423 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 IGLV10-54A0A075B6I4 117 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 A0A1B0GU33 70 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 PGPA6NDG6 321 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 LEUTXA8MZ59 168 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 GGTLC3B5MD39 225 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 K7ERS5 55 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 RGS5O15539 181 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 TCF21O43680 179 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 ENSAO43768 121 aaKnown RBP1.25□□□□□ -2.21
SCFD1-218ENST00000556256 CBR3O75828 277 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 CST4P01036 141 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 IGHMP01871 453 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 IGKV5-2P06315 115 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 SOD3P08294 240 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 CCDC172P0C7W6 258 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 PRTN3P24158 256 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 IL12BP29460 328 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 TSPOP30536 169 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 LCN1P31025 176 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 KCNJ3P48549 501 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 ETV1P50549 477 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 PLTPP55058 493 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 CCL23P55773 120 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 DHRS2Q13268 280 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 DPPA2Q7Z7J5 298 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 TMEM25Q86YD3 366 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 CPNE9Q8IYJ1 553 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 Q8NAQ8 132 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OR8G5Q8NG78 346 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OR4K17Q8NGC6 315 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OR6K3Q8NGY3 331 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 LRRC20Q8TCA0 184 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 C2orf15Q8WU43 125 aaKnown RBP1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OR5P2Q8WZ92 322 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 MAL2Q969L2 176 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OTUB2Q96DC9 234 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 ZMYND19Q96E35 227 aaPredicted RBP1.25□□□□□ -2.21
SCFD1-218ENST00000556256 C19orf60Q96EN9 201 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 IGF2BP2-AS1Q96M15 143 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 OLFM3Q96PB7 478 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 SIKE1Q9BRV8 207 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 SUCNR1Q9BXA5 334 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 MFSD1Q9H3U5 465 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 HAUS4Q9H6D7 363 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 DIABLOQ9NR28 239 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 FADS3Q9Y5Q0 445 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 NACADO15069 1562 aa1.25□□□□□ -2.21
SCFD1-218ENST00000556256 SPATA31E1Q6ZUB1 1445 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 POLR3AO14802 1390 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 IGKV1D-37A0A075B6S9 117 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 IGHV1-45A0A0A0MS14 117 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 TRAV8-3A0A0A6YYJ7 113 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 H3BMM0 161 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 AQP9O43315 295 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 PDCD6O75340 191 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 PDYNP01213 254 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 SCGB1C2P0DMR2 95 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 SLC2A1P11166 492 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 GTF2F2P13984 249 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 ZNF708P17019 499 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 FUSP35637 526 aaKnown RBP eCLIP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 C1QTNF8P60827 252 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 TSPAN5P62079 268 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 VSNL1P62760 191 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 CASP8Q14790 479 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 CEACAM21Q3KPI0 293 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 PYDC2Q56P42 97 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 TTMPQ5BVD1 217 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 CYHR1Q6ZMK1 362 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 LYPD6Q86Y78 171 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 EIF4E3Q8N5X7 224 aaKnown RBP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 ACBD4Q8NC06 268 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 BPIFB6Q8NFQ5 453 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 MUC7Q8TAX7 377 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 CMTM2Q8TAZ6 248 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 SCGB1C1Q8TD33 95 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 NELFBQ8WX92 580 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 APOBEC3DQ96AK3 386 aaPredicted RBP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 UBE2WQ96B02 151 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 PITX2Q99697 317 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 B9D2Q9BPU9 175 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 SLC25A31Q9H0C2 315 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 OR2D2Q9H210 308 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 METTL8Q9H825 291 aaKnown RBP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 RHOFQ9HBH0 211 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 C14orf166Q9Y224 244 aaKnown RBP1.24□□□□□ -2.21
SCFD1-218ENST00000556256 POFUT2Q9Y2G5 429 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 USH1CQ9Y6N9 552 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 SDK2Q58EX2 2172 aa1.24□□□□□ -2.21
SCFD1-218ENST00000556256 IGHV2-26A0A0B4J1V2 119 aa1.23□□□□□ -2.21
SCFD1-218ENST00000556256 LOC100506127A0A0U1RQW1 187 aa1.23□□□□□ -2.21
SCFD1-218ENST00000556256 A0A1B0GW15 77 aa1.23□□□□□ -2.21
SCFD1-218ENST00000556256 RAB19A4D1S5 217 aa1.23□□□□□ -2.21
SCFD1-218ENST00000556256 F8VP50 259 aa1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms