RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 ST6GALNAC6Q969X2 333 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 C16orf45Q96MC5 204 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 MICU1Q9BPX6 476 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 FNDC11Q9BVV2 318 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 RTL8AQ9BWD3 113 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 POLR2J2Q9GZM3 115 aaKnown RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 NSRP1Q9H0G5 558 aaKnown RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 POLR2J3Q9H1A7 115 aaKnown RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 MRPL22Q9NWU5 206 aaKnown RBP5.04□□□□□ -1.6
LIMA1-204ENST00000549064 PAM16Q9Y3D7 125 aa5.04□□□□□ -1.6
LIMA1-204ENST00000549064 TNCP24821 2201 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 A0A087WUU8 490 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 IGHV2-26A0A0B4J1V2 119 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 TMEM272A0A1B0GTI8 110 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 hCG_38984A0A1B0GV85 526 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SMIM30A4D0T7 59 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 GAGE12JA6NER3 117 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF850A8MQ14 1090 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SERPINE3A8MV23 424 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 FAM90A26D6RGX4 464 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ST8SIA3O43173 380 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 XRCC2O43543 280 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 PROP1O75360 226 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 NDUFB8O95169 186 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 NDUFB2O95178 105 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF728P0DKX0 622 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 IGHV4-30-4P0DP06 118 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 GP9P14770 177 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 CRABP1P29762 137 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 DDOSTP39656 456 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SLC7A2P52569 658 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 FXYD6P3P58550 94 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 STX1BP61266 288 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ACTA2P62736 377 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ACTG2P63267 376 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ACTC1P68032 377 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ACTA1P68133 377 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 PRDX4Q13162 271 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 KIR2DS1Q14954 304 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 FAM27D1Q5T7N8 215 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 MINOS1Q5TGZ0 78 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 LCN8Q6JVE9 175 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 DNM1P34Q6PK57 102 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 BAIAP2L2Q6UXY1 529 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 TMEM182Q6ZP80 229 aaPredicted RBP5.03□□□□□ -1.6
LIMA1-204ENST00000549064 TCF23Q7RTU1 214 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ADCK1Q86TW2 530 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SATL1Q86VE3 508 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZDHHC21Q8IVQ6 265 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 BATF2Q8N1L9 274 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 MREGQ8N565 214 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 UXS1Q8NBZ7 420 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 OR4P4Q8NGL7 312 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 OR10A6Q8NH74 314 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 CHPT1Q8WUD6 406 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 HPSE2Q8WWQ2 592 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 RASSF5Q8WWW0 418 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 OR5P3Q8WZ94 311 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SGK3Q96BR1 496 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZBTB9Q96C00 473 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 REEP6Q96HR9 211 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 RNF170Q96K19 258 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 PRRC1Q96M27 445 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF488Q96MN9 340 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 NMNAT3Q96T66 252 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ATP6V0BQ99437 205 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 PAIP2Q9BPZ3 127 aaKnown RBP5.03□□□□□ -1.6
LIMA1-204ENST00000549064 COPS4Q9BT78 406 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SLC5A7Q9GZV3 580 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 C1orf21Q9H246 121 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 KAT8Q9H7Z6 458 aaKnown RBP5.03□□□□□ -1.6
LIMA1-204ENST00000549064 RETNQ9HD89 108 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ISYNA1Q9NPH2 558 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 RPRD1BQ9NQG5 326 aaKnown RBP5.03□□□□□ -1.6
LIMA1-204ENST00000549064 ZNF319Q9P2F9 582 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 SIGLEC7Q9Y286 467 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 MINOS1-NBL1R4GNA1 71 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 VPS13DQ5THJ4 4388 aa5.03□□□□□ -1.6
LIMA1-204ENST00000549064 KIAA2026Q5HYC2 2103 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 TVP23AA6NH52 213 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 TMEM210A6NLX4 147 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 H3BSH0 61 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 SNNO75324 88 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-204ENST00000549064 MTRF1O75570 445 aaKnown RBP5.02□□□□□ -1.61
LIMA1-204ENST00000549064 ACKR3P25106 362 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 PRDX2P32119 198 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 PYCR1P32322 319 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 GZMMP51124 257 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 GPM6AP51674 278 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 IFFO1Q0D2I5 559 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 HNF4GQ14541 408 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 CTF1Q16619 201 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 ODF3L2Q3SX64 289 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 SLC36A3Q495N2 470 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 AGKQ53H12 422 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 LBHQ53QV2 105 aaPredicted RBP5.02□□□□□ -1.61
LIMA1-204ENST00000549064 FAM76BQ5HYJ3 339 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 ZNF730Q6ZMV8 503 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 ACP7Q6ZNF0 438 aa5.02□□□□□ -1.61
LIMA1-204ENST00000549064 MBOAT2Q6ZWT7 520 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms