RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MKXQ8IYA7 352 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 INO80EQ8NBZ0 244 aaPredicted RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 SLC2A9Q9NRM0 540 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 OR14J1Q9UGF5 321 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 LSM5Q9Y4Y9 91 aaKnown RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 TACC2O95359 2948 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 IGKV1D-13A0A0B4J2D9 117 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 CEACAM18A8MTB9 384 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 IGHG3P01860 377 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 IGKV1-13P0DP09 117 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 FGF12P61328 243 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 PSG7Q13046 419 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 AANATQ16613 207 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 OR2A2Q6IF42 318 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 LPCAT3Q6P1A2 487 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 SEM1Q6ZVN7 128 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 SGPP2Q8IWX5 399 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 SUMF2Q8NBJ7 301 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 OR1S1Q8NH92 325 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 DKK4Q9UBT3 224 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 IGKV1-6A0A0C4DH72 117 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 HSD17B6O14756 317 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 CST4P01036 141 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 FGL1Q08830 312 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 ACSF3Q4G176 576 aaPredicted RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 GGNBP1Q5YKI7 109 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 KCNRGQ8N5I3 272 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 LHFPL5Q8TAF8 219 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 NANOS1Q8WY41 292 aaKnown RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 GTF3AQ92664 365 aaKnown RBP9.45□□□□□ -0.9
CUX1-212ENST00000547394 ZNF175Q9Y473 711 aa9.45□□□□□ -0.9
CUX1-212ENST00000547394 TRAV24A0A0B4J272 114 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 PHF1O43189 567 aaPredicted RBP9.44□□□□□ -0.9
CUX1-212ENST00000547394 WDR1O75083 606 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 RRASP10301 218 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 COX5BP10606 129 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 C4BPBP20851 252 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ASCL1P50553 236 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 TGFBR3Q03167 851 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 Q6ZT83 130 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ACOT7LQ6ZUV0 252 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 OR6K3Q8NGY3 331 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 SCARB1Q8WTV0 552 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 TP53RKQ96S44 253 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 LRFN3Q9BTN0 628 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ADAT1Q9BUB4 502 aaKnown RBP9.44□□□□□ -0.9
CUX1-212ENST00000547394 GP6Q9HCN6 339 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 OBP2BQ9NPH6 170 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 SDHAF2Q9NX18 166 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 IL36GQ9NZH8 169 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ATPIF1Q9UII2 106 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 NUP50Q9UKX7 468 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 PRELID1Q9Y255 219 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 DTYMKP23919 212 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 AKR1C2P52895 323 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 UCP2P55851 309 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 GNG3P63215 75 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 AKR1C1Q04828 323 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ZNF169Q14929 603 aaPredicted RBP9.44□□□□□ -0.9
CUX1-212ENST00000547394 ARL6IP1Q15041 203 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 PRAMEF6Q5VXH4 476 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 TMEM65Q6PI78 240 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 VHLLQ6RSH7 139 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 SLC51BQ86UW2 128 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 FAM58AQ8N1B3 248 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ZADH2Q8N4Q0 377 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 SCCPDHQ8NBX0 429 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 OR5A2Q8NGI9 324 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 LINC00052Q96N35 136 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 MS4A7Q9GZW8 240 aaPredicted RBP9.44□□□□□ -0.9
CUX1-212ENST00000547394 ZC4H2Q9NQZ6 224 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 ZNF71Q9NQZ8 489 aaPredicted RBP9.44□□□□□ -0.9
CUX1-212ENST00000547394 AUP1Q9Y679 476 aa9.44□□□□□ -0.9
CUX1-212ENST00000547394 CRYM-AS1A6NIL9 109 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 ZNF891A8MT65 544 aaPredicted RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 BCL2L11O43521 198 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 PPYP01298 95 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 HLA-GP17693 338 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 HERV-K104P61576 105 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 ZNF154Q13106 437 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 IGFL2Q6UWQ7 119 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 WDR31Q8NA23 367 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 POC1AQ8NBT0 407 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 KLF14Q8TD94 323 aaPredicted RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 BSCL2Q96G97 398 aaPredicted RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 SCGB3A2Q96PL1 93 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 PARP12Q9H0J9 701 aaKnown RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 RAB18Q9NP72 206 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 COL6A6A6NMZ7 2263 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 B3GALNT1O75752 331 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 CTSDP07339 412 aaPredicted RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 CECR9P0C854 216 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 SLC25A4P12235 298 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 CEACAM1P13688 526 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 HOXC12P31275 282 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 FOXC1Q12948 553 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 PLEKHN1Q494U1 663 aaPredicted RBP9.43□□□□□ -0.9
CUX1-212ENST00000547394 DHRS11Q6UWP2 260 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 LDLRAD3Q86YD5 345 aa9.43□□□□□ -0.9
CUX1-212ENST00000547394 OR52M1Q8NGK5 317 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms