RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 PGA4P0DJD7 388 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 PGA5P0DJD9 388 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 CD33P20138 364 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 EPHA8P29322 1005 aaPredicted RBP12.74□□□□□ -0.37
HOXC11-202ENST00000546378 RND3P61587 244 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 CCL7P80098 99 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 SHBQ15464 509 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 DOK3Q7L591 496 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 TMEM37Q8WXS4 190 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 RNF150Q9ULK6 438 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 SPTAN1Q13813 2472 aaKnown RBP12.74□□□□□ -0.37
HOXC11-202ENST00000546378 DBX1A6NMT0 343 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 METTL15P1P0C7V9 234 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 SELEP16581 610 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 Q8WTZ3 238 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 HS3ST3B1Q9Y662 390 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 WSB1Q9Y6I7 421 aa12.74□□□□□ -0.37
HOXC11-202ENST00000546378 SNRPCP09234 159 aaKnown RBP12.73□□□□□ -0.37
HOXC11-202ENST00000546378 IDH3GP51553 393 aaPredicted RBP12.73□□□□□ -0.37
HOXC11-202ENST00000546378 SCAND1P57086 179 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 ERVFRD-1P60508 538 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 OPN5Q6U736 354 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 SSX3Q99909 188 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 ZNF665Q9H7R5 613 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 TINAGQ9UJW2 476 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 PPP1R3CQ9UQK1 317 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 OSGIN2Q9Y236 505 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 COL4A2P08572 1712 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 NPIPB7O75200 414 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 S100A8P05109 93 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 EWSR1Q01844 656 aaKnown RBP eCLIP12.73□□□□□ -0.37
HOXC11-202ENST00000546378 THEM4Q5T1C6 240 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 NIPSNAP3BQ9BS92 247 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 METTL9Q9H1A3 318 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 ARRDC1-AS1Q9H2J1 176 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 TMEM100Q9NV29 134 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 PILRBQ9UKJ0 227 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 C10orf142B7Z368 130 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 E5RGE8 158 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 M0R296 226 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 SMIM6P0DI80 62 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 GALNSP34059 522 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 RTP5Q14D33 572 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 FDX2Q6P4F2 183 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 HS3ST6Q96QI5 342 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 MSL2Q9HCI7 577 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 NSG2Q9Y328 171 aa12.73□□□□□ -0.37
HOXC11-202ENST00000546378 GPR137BO60478 399 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 SRSF10O75494 262 aaKnown RBP12.72□□□□□ -0.37
HOXC11-202ENST00000546378 MELTFP08582 738 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 SCTP09683 121 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 FRZBQ92765 325 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 C1orf147Q96MC9 270 aaPredicted RBP12.72□□□□□ -0.37
HOXC11-202ENST00000546378 FAM234AQ9H0X4 552 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 A0A1W2PPQ1 181 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 PQLC2LA1A4F0 135 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 RBFOX3A6NFN3 312 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 CHST1O43916 411 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 CD5P06127 495 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 OR14L1PQ8NHC6 308 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 SAT2Q96F10 170 aaPredicted RBP12.72□□□□□ -0.37
HOXC11-202ENST00000546378 SLC7A10Q9NS82 523 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 NECAP2Q9NVZ3 263 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 GFOD1Q9NXC2 390 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 AKAP6Q13023 2319 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 IGSF23A1L1A6 192 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 WDR1O75083 606 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 ISG15P05161 165 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 PGA3P0DJD8 388 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 APOBEC1P41238 236 aaKnown RBP12.72□□□□□ -0.37
HOXC11-202ENST00000546378 HGFACQ04756 655 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 SPANXN5Q5MJ07 72 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 MAML2Q8IZL2 1156 aaPredicted RBP12.72□□□□□ -0.37
HOXC11-202ENST00000546378 OR2C3Q8N628 320 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 OR10AD1Q8NGE0 317 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 OR51M1Q9H341 326 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 NAA60Q9H7X0 242 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 PARP11Q9NR21 331 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 CCL28Q9NRJ3 127 aa12.72□□□□□ -0.37
HOXC11-202ENST00000546378 A0A1B0GTQ1 180 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 TRAF3IP2O43734 574 aaPredicted RBP12.71□□□□□ -0.37
HOXC11-202ENST00000546378 SOD3P08294 240 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 RAB5CP51148 216 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 GPM6AP51674 278 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 CASP6P55212 293 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 IGLV3-21P80748 117 aaPredicted RBP12.71□□□□□ -0.37
HOXC11-202ENST00000546378 DCDP81605 110 aaKnown RBP12.71□□□□□ -0.37
HOXC11-202ENST00000546378 SKA3Q8IX90 412 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 GAPTQ8N292 157 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 DNAJB11Q9UBS4 358 aa12.71□□□□□ -0.37
HOXC11-202ENST00000546378 CHD3Q12873 2000 aaKnown RBP12.71□□□□□ -0.37
HOXC11-202ENST00000546378 NDUFB7P17568 137 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 MSR1P21757 451 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 LIPHQ8WWY8 451 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 OPA3Q9H6K4 179 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 VSIRQ9H7M9 311 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 TUBA4BQ9H853 241 aa12.71□□□□□ -0.38
HOXC11-202ENST00000546378 A0A1W2PQM1 296 aa12.7□□□□□ -0.38
HOXC11-202ENST00000546378 GALR2O43603 387 aaPredicted RBP12.7□□□□□ -0.38
HOXC11-202ENST00000546378 CD55P08174 381 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms