RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 TPD52L2O43399 206 aaKnown RBP15.44■□□□□ 0.06
VIM-209ENST00000544301 SYNGR1O43759 233 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 AKR1C2P52895 323 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 AKR1C1Q04828 323 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 MPV17LQ2QL34 196 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 BCL2L2Q92843 193 aaPredicted RBP15.44■□□□□ 0.06
VIM-209ENST00000544301 PLEKHA2Q9HB19 425 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 MMP26Q9NRE1 261 aa15.44■□□□□ 0.06
VIM-209ENST00000544301 TRGV5A0A0B4J1U4 118 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 CDK2AP1O14519 115 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 ABCD4O14678 606 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 NUPL2O15504 423 aaKnown RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 LILRA1O75019 489 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 TMEM33P57088 247 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 CLN3Q13286 438 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 ZNF766Q5HY98 468 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 TMEM268Q5VZI3 342 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 FBXW9Q5XUX1 488 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 EIF5AL1Q6IS14 154 aaKnown RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 SAT2Q96F10 170 aaPredicted RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 SMIM8Q96KF7 97 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 TP53RKQ96S44 253 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 E5RGE8 158 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 DIRAS3O95661 229 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 GAPDHP04406 335 aaKnown RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 DUSP1P28562 367 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 GNRHRP30968 328 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 ARG2P78540 354 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 SRSF3P84103 164 aaKnown RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 DPPA2Q7Z7J5 298 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 OR4A4PQ8NGN8 299 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 FBXO9Q9UK97 447 aaPredicted RBP15.43■□□□□ 0.06
VIM-209ENST00000544301 NSG2Q9Y328 171 aa15.43■□□□□ 0.06
VIM-209ENST00000544301 SLC22A20A6NK97 555 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 ANKRD30BLA7E2S9 258 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 MPPED1O15442 326 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 SCTP09683 121 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 TSC22D1Q15714 1073 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 HAGHLQ6PII5 290 aaPredicted RBP15.42■□□□□ 0.06
VIM-209ENST00000544301 OR52M1Q8NGK5 317 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 OR51B6Q9H340 312 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 MPC1Q9Y5U8 109 aa15.42■□□□□ 0.06
VIM-209ENST00000544301 C3orf85A0A1B0GTC6 90 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 DNASE2O00115 360 aaPredicted RBP15.41■□□□□ 0.06
VIM-209ENST00000544301 HSPB6O14558 160 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 JTBO76095 146 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 ATG12O94817 140 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 PRKACAP17612 351 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 ATF4P18848 351 aaPredicted RBP15.41■□□□□ 0.06
VIM-209ENST00000544301 NOVA1P51513 510 aaKnown RBP15.41■□□□□ 0.06
VIM-209ENST00000544301 SMUG1Q53HV7 270 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 IL34Q6ZMJ4 242 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 MDP1Q86V88 176 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 FAM185AQ8N0U4 392 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 ERGIC1Q969X5 290 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 SMIM3Q9BZL3 60 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 TK1P04183 234 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 KCNJ3P48549 501 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 PJVKQ0ZLH3 352 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 TRIP6Q15654 476 aaKnown RBP15.41■□□□□ 0.06
VIM-209ENST00000544301 LDLRAD3Q86YD5 345 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 SLC35G3Q8N808 338 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 ZNF488Q96MN9 340 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 NKX6-2Q9C056 277 aaPredicted RBP15.41■□□□□ 0.06
VIM-209ENST00000544301 ZDHHC11Q9H8X9 412 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 PLA2G2EQ9NZK7 142 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 TMED3Q9Y3Q3 217 aa15.41■□□□□ 0.06
VIM-209ENST00000544301 TRDCB7Z8K6 153 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 ADCYAP1P18509 176 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 SPINK2P20155 84 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 LPAR6P43657 344 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 SULT1A2P50226 295 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 HERPUD1Q15011 391 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 FBXW12Q6X9E4 464 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 MEX3BQ6ZN04 569 aaKnown RBP15.4■□□□□ 0.06
VIM-209ENST00000544301 TMPRSS7Q7RTY8 843 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 ZNF573Q86YE8 665 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 NEK7Q8TDX7 302 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 NANOS1Q8WY41 292 aaKnown RBP15.4■□□□□ 0.06
VIM-209ENST00000544301 BSCL2Q96G97 398 aaPredicted RBP15.4■□□□□ 0.06
VIM-209ENST00000544301 HRH4Q9H3N8 390 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 PLK3Q9H4B4 646 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 OR5B21A6NL26 309 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 FBXO24O75426 580 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 MED6O75586 246 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 GNG3P63215 75 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 OR2T2Q6IF00 324 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 CLEC9AQ6UXN8 241 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 LINC00596Q86U02 117 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 SUMF2Q8NBJ7 301 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 TMEM178AQ8NBL3 297 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 SECTM1Q8WVN6 248 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 TMEM222Q9H0R3 208 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 GP6Q9HCN6 339 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 ZFP57Q9NU63 452 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 LHX6Q9UPM6 363 aa15.4■□□□□ 0.06
VIM-209ENST00000544301 PCNX2A6NKB5 2137 aa15.39■□□□□ 0.05
VIM-209ENST00000544301 DOCK7Q96N67 2140 aa15.39■□□□□ 0.05
VIM-209ENST00000544301 FAM186AA6NE01 2351 aa15.39■□□□□ 0.05
VIM-209ENST00000544301 GPR137BO60478 399 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms