RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	RUNX3	Q13761	415 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ITPRIPL2	Q3MIP1	535 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC25A52	Q3SY17	297 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	HBM	Q6B0K9	141 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	RTL6	Q6ICC9	239 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	RHBDD2	Q6NTF9	364 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	NCEH1	Q6PIU2	408 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CLEC20A	Q6ZU45	233 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	KLHDC8A	Q8IYD2	350 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CA13	Q8N1Q1	262 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	BMPER	Q8N8U9	685 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	FER1L6-AS1	Q8NA97	138 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CADM4	Q8NFZ8	388 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	OR11G2	Q8NGC1	345 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	OR5A1	Q8NGJ0	315 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	OR52B4	Q8NGK2	314 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	GRAPL	Q8TC17	118 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SMIM4	Q8WVI0	70 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	PSMF1	Q92530	271 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	GLYATL1	Q969I3	302 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	DDIT4L	Q96D03	193 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLAMF6	Q96DU3	332 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ZMYND19	Q96E35	227 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC35G5	Q96KT7	338 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	TBL1Y	Q9BQ87	522 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ADAT1	Q9BUB4	502 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	KRTAP9-8	Q9BYQ0	159 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC17A9	Q9BYT1	436 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC25A18	Q9H1K4	315 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	SLC35B3	Q9H1N7	401 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ALG9	Q9H6U8	611 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	NMRAL1	Q9HBL8	299 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	INPP5E	Q9NRR6	644 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	DCAF13	Q9NV06	445 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	MMP17	Q9ULZ9	603 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	PSG8	Q9UQ74	426 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	NTNG1	Q9Y2I2	539 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	UFC1	Q9Y3C8	167 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	OR10H1	Q9Y4A9	318 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	LSM4	Q9Y4Z0	139 aa	Known RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	TSSC4	Q9Y5U2	329 aa	Predicted RBP	4.79	□□□□□ -1.64
CD44-231	ENST00000531110	ENPP4	Q9Y6X5	453 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	COL24A1	Q17RW2	1714 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	TNS2	Q63HR2	1409 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	BTAF1	O14981	1849 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	CIT	O14578	2027 aa		4.79	□□□□□ -1.64
CD44-231	ENST00000531110	TRIP12	Q14669	1992 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	MEGF6	O75095	1541 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110		A0A0G2JMZ2	1700 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	LRRC37A2	A6NM11	1700 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	LRRC37A	A6NMS7	1700 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	NRAP	Q86VF7	1730 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GBF1	Q92538	1859 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	hCG_1818297	A0A087WSY0	165 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	TMEM202	A6NGA9	273 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GABARAP	H6UMI1	98 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110		H7BYZ3	331 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110		K7EPK0	472 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	YPEL1	O60688	119 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	PSMD10	O75832	226 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	DUS4L	O95620	317 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	PPP1R3D	O95685	299 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SOD1	P00441	154 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	CGA	P01215	116 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GBA	P04062	536 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SERPINE2	P07093	398 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ERG	P11308	486 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	CD1D	P15813	335 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	HIST1H1D	P16402	221 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	HIST1H1C	P16403	213 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	RPS4Y1	P22090	263 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GLIPR1	P48060	266 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SULT1A2	P50226	295 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	GPM6A	P51674	278 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	RAB38	P57729	211 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	UBE2K	P61086	200 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	CYCS	P99999	105 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	BCL2L1	Q07817	233 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	FUT7	Q11130	342 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	RBM39	Q14498	530 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	NFATC4	Q14934	902 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SNRNP35	Q16560	246 aa	Known RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ANKRD55	Q3KP44	614 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	LRRC73	Q5JTD7	316 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SOHLH1	Q5JUK2	328 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	OR2T5	Q6IEZ7	315 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	FAAP20	Q6NZ36	180 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ENPP7	Q6UWV6	458 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	DNM1P46	Q6ZS02	220 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SMIM5	Q71RC9	77 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	FAM71E2	Q8N5Q1	922 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SLC5A8	Q8N695	610 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	RELL2	Q8NC24	303 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	ZNF114	Q8NC26	417 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	B3GNT7	Q8NFL0	401 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	OR51T1	Q8NGJ9	327 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	OR2T29	Q8NH02	315 aa		4.78	□□□□□ -1.64
CD44-231	ENST00000531110	SPRYD4	Q8WW59	207 aa	Predicted RBP	4.78	□□□□□ -1.64
CD44-231	ENST00000531110	TSLP	Q969D9	159 aa		4.78	□□□□□ -1.64

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