RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ST3GAL6Q9Y274 331 aa6.2□□□□□ -1.42
CD44-228ENST00000528455 MTORP42345 2549 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PPIAL4EA0A075B759 164 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 A0A0B4J203 849 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TRAV38-1A0A0B4J264 116 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 hCG_1807616A0A1W2PRN6 198 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 FABP12A6NFH5 140 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PPIAL4DF5H284 164 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 F8VVB4 439 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 F8VWA3 439 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 RAB27BO00194 218 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TNFRSF13BO14836 293 aaPredicted RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 NXPH2O95156 264 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 MPIG6BO95866 241 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PLATP00750 562 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 MELTFP08582 738 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PPIAL4FP0DN26 164 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 SERPINA2P20848 420 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 FUT3P21217 361 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 GIFP27352 417 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PRDX2P32119 198 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TALDO1P37837 337 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TMEM50BP56557 158 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 RIPPLY3P57055 190 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PITPNAQ00169 270 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 IL13RA2Q14627 380 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 MICBQ29980 383 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 MPV17LQ2QL34 196 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TEX36Q5VZQ5 186 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 OR10K2Q6IF99 312 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 Q6ZTK2 550 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 PEG10Q86TG7 708 aaKnown RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 CCDC190Q86UF4 302 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 LINC01356Q8N9X3 169 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 LGALS14Q8TCE9 139 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 S100ZQ8WXG8 99 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 RAB1CQ92928 201 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 EMG1Q92979 244 aaKnown RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 FAM46BQ96A09 425 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 MED30Q96HR3 178 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 DIRAS2Q96HU8 199 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 NKX3-1Q99801 234 aaPredicted RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 GAL3ST1Q99999 423 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TMEM59Q9BXS4 323 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 SELENOIQ9C0D9 397 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 ATG5Q9H1Y0 275 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 BANF2Q9H503 90 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 CHODLQ9H9P2 273 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 BARX1Q9HBU1 254 aaPredicted RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 SPACA1Q9HBV2 294 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 TMEM165Q9HC07 324 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 BEX4Q9NWD9 120 aaPredicted RBP6.19□□□□□ -1.42
CD44-228ENST00000528455 PPIAL4AQ9Y536 164 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 ZFHX3Q15911 3703 aa6.19□□□□□ -1.42
CD44-228ENST00000528455 DOCK11Q5JSL3 2073 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 IGHV3-64DA0A0J9YX35 117 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 A0A1W2PP11 408 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 OR2AT4A6NND4 320 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 FOXI3A8MTJ6 420 aaPredicted RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 FAM25AB3EWG3 89 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 FAM25CB3EWG5 89 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 FAM25GB3EWG6 89 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 LGALS8O00214 317 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 NDUFS8O00217 210 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 GEMIN2O14893 280 aaKnown RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 DEGS1O15121 323 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 CA11O75493 328 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 RP2O75695 350 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 PSG2P11465 335 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 PRKACAP17612 351 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 BLVRBP30043 206 aaPredicted RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 CDKN1AP38936 164 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 MNDAP41218 407 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 NR4A2P43354 598 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 VEGFCP49767 419 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 EFNB2P52799 333 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 RBM11P57052 281 aaKnown RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 DSCR9P59020 149 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 RBM39Q14498 530 aaKnown RBP6.18□□□□□ -1.42
CD44-228ENST00000528455 TAF9Q16594 264 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 SMIM21Q3B7S5 101 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 CDNFQ49AH0 187 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 SPANXN2Q5MJ10 180 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 Q6P435 159 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 BAIAP2L2Q6UXY1 529 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 KRTAP19-1Q8IUB9 90 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 LRRC75A-AS1Q8N1F1 130 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 CHST4Q8NCG5 386 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 OR5D13Q8NGL4 314 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 OR10K1Q8NGX5 313 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 OR10R2Q8NGX6 335 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 YIPF5Q969M3 257 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 TIMD4Q96H15 378 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 C16orf92Q96LL3 132 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 ZNF488Q96MN9 340 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 NEDD4LQ96PU5 975 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 WDR13Q9H1Z4 485 aa6.18□□□□□ -1.42
CD44-228ENST00000528455 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP6.18□□□□□ -1.42
CD44-228ENST00000528455 PLEKHJ1Q9NW61 149 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms