RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 TMPRSS13Q9BYE2 586 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 WDR13Q9H1Z4 485 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 Q9N2K0 584 aa17.57■□□□□ 0.4
VPS28-209ENST00000528142 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 PLSCR5A0PG75 271 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 DBX1A6NMT0 343 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 GRPP07492 148 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 RPS2P15880 293 aaKnown RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 CCKARP32238 428 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 RGS7BPQ6MZT1 257 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 ALKBH2Q6NS38 261 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 DHRS9Q9BPW9 319 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 TLNRD1Q9H1K6 362 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 CHMP1AQ9HD42 196 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 JKAMPQ9P055 326 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 SLC23A1Q9UHI7 598 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 PRR14LQ5THK1 2151 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 IGHV3-64DA0A0J9YX35 117 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 NOS1APO75052 506 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 CRYAAP02489 173 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 NKX6-1P78426 367 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 LIN54Q6MZP7 749 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 CLEC18BQ6UXF7 455 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 SPERTQ8NA61 448 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 DPCDQ9BVM2 203 aaPredicted RBP17.56■□□□□ 0.4
VPS28-209ENST00000528142 ELOVL5Q9NYP7 299 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 SH3BGRL2Q9UJC5 107 aa17.56■□□□□ 0.4
VPS28-209ENST00000528142 ATRXP46100 2492 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 MAP1BP46821 2468 aaKnown RBP17.55■□□□□ 0.4
VPS28-209ENST00000528142 HSPB6O14558 160 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 CTSDP07339 412 aaPredicted RBP17.55■□□□□ 0.4
VPS28-209ENST00000528142 PGAM2P15259 253 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 POC1AQ8NBT0 407 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 RELL2Q8NC24 303 aaPredicted RBP17.55■□□□□ 0.4
VPS28-209ENST00000528142 RIMS4Q9H426 269 aaPredicted RBP17.55■□□□□ 0.4
VPS28-209ENST00000528142 HES4Q9HCC6 221 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 MSL2Q9HCI7 577 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 PKD1L2Q7Z442 2459 aa17.55■□□□□ 0.4
VPS28-209ENST00000528142 TRBV6-6A0A0A6YYG2 114 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 A0A0B4J2A0 478 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 HS3ST1O14792 307 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 DEGS1O15121 323 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 ZNF205O95201 554 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 ZNF250P15622 560 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 ZNF146Q15072 292 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 RDH5Q92781 318 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 SHPKQ9UHJ6 478 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 SPEF1Q9Y4P9 236 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 CD8AP01732 235 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 FCGR2CP31995 323 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 GLRXP35754 106 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 RBPJQ06330 500 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 PCSK4Q6UW60 755 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 MRPL30Q8TCC3 161 aaKnown RBP17.54■□□□□ 0.4
VPS28-209ENST00000528142 NEK7Q8TDX7 302 aa17.54■□□□□ 0.4
VPS28-209ENST00000528142 C14orf166Q9Y224 244 aaKnown RBP17.54■□□□□ 0.4
VPS28-209ENST00000528142 TMEM8BA6NDV4 472 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 CCSO14618 274 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 ATP6V1G1O75348 118 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 RBM39Q14498 530 aaKnown RBP17.53■□□□□ 0.4
VPS28-209ENST00000528142 SLC9A3R2Q15599 337 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 KCTD9Q7L273 389 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 LRP11Q86VZ4 500 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 USB1Q9BQ65 265 aaKnown RBP17.53■□□□□ 0.4
VPS28-209ENST00000528142 FXYD6Q9H0Q3 95 aa17.53■□□□□ 0.4
VPS28-209ENST00000528142 C16orf97H3BN30 126 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 NXPH2O95156 264 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 OR2H2O95918 312 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 IGHV3-13P01766 116 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 ZNF44P15621 663 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 IGSF11Q5DX21 431 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 ZNF880Q6PDB4 577 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 C20orf204Q6ZNR8 217 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 ZNF826PQ6ZT77 177 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 CLEC4MQ9H2X3 399 aaPredicted RBP17.52■□□□□ 0.4
VPS28-209ENST00000528142 HEXA-AS1Q9H8Q6 139 aa17.52■□□□□ 0.4
VPS28-209ENST00000528142 KNG1P01042 644 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ANKRD55Q3KP44 614 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 SPIN3Q5JUX0 258 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 PRAMEF6Q5VXH4 476 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 C5orf24Q7Z6I8 188 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 TMEM171Q8WVE6 324 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 MOB3AQ96BX8 217 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ATP23Q9Y6H3 246 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ACACBO00763 2458 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 TRAV14DV4A0A0A6YYC5 116 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 HMSDA8MTL9 139 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 TRDCB7Z8K6 153 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ATP6V1G2-DDX39BF2Z307 99 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 SLC33A1O00400 549 aaPredicted RBP17.51■□□□□ 0.39
VPS28-209ENST00000528142 SCTP09683 121 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ZNF728P0DKX0 622 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 CXCL2P19875 107 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 NFYAP23511 347 aaPredicted RBP17.51■□□□□ 0.39
VPS28-209ENST00000528142 GLP1RP43220 463 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 ZNF81P51508 661 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 UCP3P55916 312 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 SHEQ5VZ18 495 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 WDR82Q6UXN9 313 aa17.51■□□□□ 0.39
VPS28-209ENST00000528142 DMRTA2Q96SC8 542 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms