RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 C9orf135Q5VTT2 229 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 TCEAL6Q6IPX3 200 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 DPPA2Q7Z7J5 298 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 OR52M1Q8NGK5 317 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 PCSK5Q92824 1860 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 TCEAL3Q969E4 200 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 SLAMF9Q96A28 289 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 TP53RKQ96S44 253 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 GINS3Q9BRX5 216 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 PRRG4Q9BZD6 226 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 Q9N2K0 584 aa18.26■□□□□ 0.51
VPS28-205ENST00000526204 COL27A1Q8IZC6 1860 aaPredicted RBP18.25■□□□□ 0.51
VPS28-205ENST00000526204 GLI4P10075 376 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 GPM6AP51674 278 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 OR1C1Q15619 314 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 HFEQ30201 348 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 TMEM164Q5U3C3 297 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 CBLN2Q8IUK8 224 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 SLC35G3Q8N808 338 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 OR4D5Q8NGN0 318 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 HPSE2Q8WWQ2 592 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 APH1AQ96BI3 265 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 TTTY12Q9BZ98 90 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 TMEM222Q9H0R3 208 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 NAPSAO96009 420 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 HEXAP06865 529 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 GNRHRP30968 328 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 NPBWR1P48145 328 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 RND3P61587 244 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 HIST1H2AAQ96QV6 131 aa18.25■□□□□ 0.51
VPS28-205ENST00000526204 SS18L1O75177 396 aaPredicted RBP18.24■□□□□ 0.51
VPS28-205ENST00000526204 DANCRP0C864 163 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 SPP1P10451 314 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 MPLP40238 635 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 MAGEA5P43359 124 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 RAB5CP51148 216 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 OR5A2Q8NGI9 324 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 KIRREL1Q96J84 757 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 LUZP4Q9P127 313 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 PRELID3BQ9Y3B1 194 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 CNTRLQ7Z7A1 2325 aa18.24■□□□□ 0.51
VPS28-205ENST00000526204 KIR2DS1A0A191URI9 304 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 FAM166BA8MTA8 275 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 TRAPPC2LH3BP13 241 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 AGPAT2O15120 278 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 TSPAN15O95858 294 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 F12P00748 615 aaPredicted RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 CTXN2P0C2S0 81 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 CD80P33681 288 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 KIR2DS4P43632 304 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 KIR2DS1Q14954 304 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 RNPS1Q15287 305 aaKnown RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 CDCP2Q5VXM1 449 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 MEX3BQ6ZN04 569 aaKnown RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 ZNF565Q8N9K5 539 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 TMEM56Q96MV1 263 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 SPIN2AQ99865 258 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 SPIN2BQ9BPZ2 258 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 PLK3Q9H4B4 646 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 FOXJ2Q9P0K8 574 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 TMEM56-RWDD3S4R434 201 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 ZNF732B4DXR9 585 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 TRDCB7Z8K6 153 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 OR8U9P0C7N5 309 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 CCL2P13500 99 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 KCNJ3P48549 501 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 RAB1AP62820 205 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 PLP2Q04941 152 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 HMGN3Q15651 99 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 DCAF10Q5QP82 559 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 BATF2Q8N1L9 274 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 DMBX1Q8NFW5 382 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 OR8U1Q8NH10 309 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 HES7Q9BYE0 225 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 FGF23Q9GZV9 251 aaPredicted RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 RIMS4Q9H426 269 aaPredicted RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 WFDC1Q9HC57 220 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 MLXQ9UH92 298 aa18.23■□□□□ 0.51
VPS28-205ENST00000526204 RCL1Q9Y2P8 373 aaKnown RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 UBE2J1Q9Y385 318 aaPredicted RBP18.23■□□□□ 0.51
VPS28-205ENST00000526204 ITGA3P26006 1051 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 CLEC9AQ6UXN8 241 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 LINC00596Q86U02 117 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 GTF3AQ92664 365 aaKnown RBP18.22■□□□□ 0.51
VPS28-205ENST00000526204 BSCL2Q96G97 398 aaPredicted RBP18.22■□□□□ 0.51
VPS28-205ENST00000526204 SPACA1Q9HBV2 294 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 MTCH1Q9NZJ7 389 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 ZDHHC8Q9ULC8 765 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 STRAPQ9Y3F4 350 aaKnown RBP18.22■□□□□ 0.51
VPS28-205ENST00000526204 PLGLB1Q02325 96 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 TBC1D26Q86UD7 250 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 ZNF695Q8IW36 515 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 TMEM251Q8N6I4 163 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 POM121L2Q96KW2 1035 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 ARRDC1-AS1Q9H2J1 176 aa18.22■□□□□ 0.51
VPS28-205ENST00000526204 DUXBA0A1W2PPF3 345 aa18.21■□□□□ 0.51
VPS28-205ENST00000526204 FAM157AC9JC47 383 aa18.21■□□□□ 0.51
VPS28-205ENST00000526204 SPIN3Q5JUX0 258 aa18.21■□□□□ 0.51
VPS28-205ENST00000526204 ABHD14BQ96IU4 210 aa18.21■□□□□ 0.51
VPS28-205ENST00000526204 KPTNQ9Y664 436 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms