RNA–Protein interactions for RNA: ENST00000507247.5

RNF4-208, Transcript of ring finger protein 4, humanhuman

TSL 1 (best)

Gene RNF4, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-208ENST00000507247 PECRQ9BY49 303 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 CHST6Q9GZX3 395 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 SHARPINQ9H0F6 387 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 PPA2Q9H2U2 334 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 ZMAT3Q9HA38 289 aaKnown RBP11.81□□□□□ -0.52
RNF4-208ENST00000507247 KAAG1Q9UBP8 84 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 EXTL2Q9UBQ6 330 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 ADAM30Q9UKF2 790 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 KCNK7Q9Y2U2 307 aa11.81□□□□□ -0.52
RNF4-208ENST00000507247 ANKRD17O75179 2603 aaKnown RBP11.81□□□□□ -0.52
RNF4-208ENST00000507247 DSCAML1Q8TD84 2053 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 PRRC2AP48634 2157 aaKnown RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 TRAV18A0A075B6X5 111 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 F5H0A9 414 aaPredicted RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 MFNGO00587 321 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 XRCC3O43542 346 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 NDUFA2O43678 99 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 SCGNO76038 276 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 PTHLHP12272 177 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 HIST1H1DP16402 221 aaKnown RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 GNB3P16520 340 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 S100A5P33763 92 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 OR3A1P47881 315 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 IL13RA1P78552 427 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 ZNF260Q3ZCT1 412 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 PAN3Q58A45 887 aaKnown RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 Q6ZTK2 550 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 SLC36A1Q7Z2H8 476 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 CCDC190Q86UF4 302 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 ZNF561Q8N587 486 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 SPICQ8N5J4 248 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 CHST4Q8NCG5 386 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 TMEM185AQ8NFB2 350 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 CLDND2Q8NHS1 167 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 PLPPR1Q8TBJ4 325 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 RAB3CQ96E17 227 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 SNX22Q96L94 193 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 NUDT16L1Q9BRJ7 211 aaKnown RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 DPCDQ9BVM2 203 aaPredicted RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 PATZ1Q9HBE1 687 aaKnown RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 DIABLOQ9NR28 239 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 PLEKHJ1Q9NW61 149 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 ELF5Q9UKW6 265 aaPredicted RBP11.8□□□□□ -0.52
RNF4-208ENST00000507247 HSF4Q9ULV5 492 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 DOCK11Q5JSL3 2073 aa11.8□□□□□ -0.52
RNF4-208ENST00000507247 POLQO75417 2590 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 A0A096LNT2 108 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 A0A0A6YYH2 397 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 IGHV4-61A0A0C4DH41 118 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 UBE2QL1A1L167 161 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 A6NJ64 397 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 K7N7A8 449 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 IGHV2-5P01817 119 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 WNT2P09544 360 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 RPS2P15880 293 aaKnown RBP11.79□□□□□ -0.52
RNF4-208ENST00000507247 TAS2R20P59543 309 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 SEC61A1P61619 476 aaKnown RBP11.79□□□□□ -0.52
RNF4-208ENST00000507247 CDNFQ49AH0 187 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 TMEM69Q5SWH9 247 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 PRSS57Q6UWY2 283 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 ZNF841Q6ZN19 808 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 ST8SIA4Q92187 359 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 PHF21AQ96BD5 680 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 FOXC2Q99958 501 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 SOSTQ9BQB4 213 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 FAAP24Q9BTP7 215 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 SPACA1Q9HBV2 294 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 MIOXQ9UGB7 285 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 CR1P17927 2039 aa11.79□□□□□ -0.52
RNF4-208ENST00000507247 YLPM1P49750 1951 aaKnown RBP11.78□□□□□ -0.52
RNF4-208ENST00000507247 TMEM235A6NFC5 223 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 MCRIP1C9JLW8 97 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 DVL1O14640 695 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 HLA-DQB1P01920 261 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 TK1P04183 234 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 SLC25A16P16260 332 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 LMO4P61968 165 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 ATXN7L3Q14CW9 347 aaPredicted RBP11.78□□□□□ -0.52
RNF4-208ENST00000507247 GRK1Q15835 563 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 SHEQ5VZ18 495 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 OR8H2Q8N162 312 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 NEK7Q8TDX7 302 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 GCDHQ92947 438 aaPredicted RBP11.78□□□□□ -0.52
RNF4-208ENST00000507247 NEIL1Q96FI4 390 aaPredicted RBP11.78□□□□□ -0.52
RNF4-208ENST00000507247 COQ2Q96H96 371 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 MED30Q96HR3 178 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 Q96MF0 132 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.78□□□□□ -0.52
RNF4-208ENST00000507247 ING3Q9NXR8 418 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 SLC25A10Q9UBX3 287 aaPredicted RBP11.78□□□□□ -0.52
RNF4-208ENST00000507247 AK3Q9UIJ7 227 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 PCDHB10Q9UN67 800 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 V9GYH0 126 aa11.78□□□□□ -0.52
RNF4-208ENST00000507247 A0A0G2JMP0 313 aa11.77□□□□□ -0.53
RNF4-208ENST00000507247 A0A0X1KG70 313 aa11.77□□□□□ -0.53
RNF4-208ENST00000507247 NDUFB3O43676 98 aa11.77□□□□□ -0.53
RNF4-208ENST00000507247 CSN2P05814 226 aa11.77□□□□□ -0.53
RNF4-208ENST00000507247 GLAP06280 429 aa11.77□□□□□ -0.53
RNF4-208ENST00000507247 GSTP1P09211 210 aaKnown RBP11.77□□□□□ -0.53
RNF4-208ENST00000507247 IL2RGP31785 369 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms