RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 C11orf87Q6NUJ2 197 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 CLEC18BQ6UXF7 455 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 TMEM54Q969K7 222 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 CNIH1O95406 144 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 SNRNP70P08621 437 aaKnown RBP12.21□□□□□ -0.46
TCOF1-207ENST00000504761 FAM3AP98173 230 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 AESQ08117 197 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 CST9LP1Q5W188 147 aa12.21□□□□□ -0.46
TCOF1-207ENST00000504761 TMEM182Q6ZP80 229 aaPredicted RBP12.21□□□□□ -0.46
TCOF1-207ENST00000504761 PPIHO43447 177 aaKnown RBP12.2□□□□□ -0.46
TCOF1-207ENST00000504761 WISP1O95388 367 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 DUS4LO95620 317 aaKnown RBP12.2□□□□□ -0.46
TCOF1-207ENST00000504761 TESK1Q15569 626 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 HFEQ30201 348 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SLC25A53Q5H9E4 307 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 C1orf100Q5SVJ3 147 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 C1QL2Q7Z5L3 287 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 ADAMTS17Q8TE56 1095 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 OR2D2Q9H210 308 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.2□□□□□ -0.469e-7■■■■□ 23
TCOF1-207ENST00000504761 ZNF708P17019 499 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 GNB1P62873 340 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 RHEBQ15382 184 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 KRTCAP3Q53RY4 240 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 GGNBP1Q5YKI7 109 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 FDX2Q6P4F2 183 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SAP30LQ9HAJ7 183 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SLC39A9Q9NUM3 307 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 PLXNA2O75051 1894 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 ZNF724A8MTY0 619 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 E5RGE8 158 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SHOXO15266 292 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 IL3RAP26951 378 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 NPBWR2P48146 333 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 BTN1A1Q13410 526 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SUMF2Q8NBJ7 301 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 SDHCQ99643 169 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-207ENST00000504761 CCL28Q9NRJ3 127 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 NSG2Q9Y328 171 aa12.2□□□□□ -0.46
TCOF1-207ENST00000504761 PUS1Q9Y606 427 aaKnown RBP eCLIP12.2□□□□□ -0.46
TCOF1-207ENST00000504761 ATP6V1G2-DDX39BF2Z307 99 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 FCGR3BO75015 233 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 KITLGP21583 273 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 RBM11P57052 281 aaKnown RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 CEACAM21Q3KPI0 293 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 LRRC10Q5BKY1 277 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 BTNL3Q6UXE8 466 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 BAP18Q8IXM2 172 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 ZNF75AQ96N20 296 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 TMEM231Q9H6L2 316 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 A0A0G2JK05 382 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 TUBAL3A6NHL2 446 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 MT-CO2P00403 227 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 PPYP01298 95 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 CLEC9AQ6UXN8 241 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 LRFN3Q9BTN0 628 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 RCL1Q9Y2P8 373 aaKnown RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 C3orf85A0A1B0GTC6 90 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 CSRP1P21291 193 aaKnown RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 LHX2P50458 406 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 UCNP55089 124 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 FOXG1P55316 489 aaPredicted RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 ZNF260Q3ZCT1 412 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 MRPL41Q8IXM3 137 aaKnown RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 TMEM68Q96MH6 324 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 NAA60Q9H7X0 242 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 NOTCH2Q04721 2471 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 A0A1W2PPH5 198 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 A0A1W2PRD5 423 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 A0A1W2PRF3 423 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 A0A1W2PRM7 423 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 PTGDSP41222 190 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 TLE1Q04724 770 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 ZNF529Q6P280 563 aa12.19□□□□□ -0.46
TCOF1-207ENST00000504761 MSI2Q96DH6 328 aaKnown RBP12.19□□□□□ -0.46
TCOF1-207ENST00000504761 ACKR3P25106 362 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 CEBPDP49716 269 aaPredicted RBP12.18□□□□□ -0.46
TCOF1-207ENST00000504761 CLDN18P56856 261 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 TMPRSS3P57727 454 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 RAB11AP62491 216 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 PEA15Q15121 130 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 SPINK9Q5DT21 86 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 ST8SIA2Q92186 375 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 NCOR2Q9Y618 2525 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 MPC2O95563 127 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 ERVS71-1P61550 626 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 GAPTQ8N292 157 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 ERGIC1Q969X5 290 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 S100PBPQ96BU1 408 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 GPHA2Q96T91 129 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 UNKLQ9H9P5 680 aaKnown RBP12.18□□□□□ -0.46
TCOF1-207ENST00000504761 JTBO76095 146 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 OR8U8P0C7N1 319 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 IGSF11Q5DX21 431 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 PINX1Q96BK5 328 aaKnown RBP12.18□□□□□ -0.46
TCOF1-207ENST00000504761 SCMH1Q96GD3 660 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 CA10Q9NS85 328 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 VSIG4Q9Y279 399 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 CREBBPQ92793 2442 aa12.18□□□□□ -0.46
TCOF1-207ENST00000504761 KIAA2026Q5HYC2 2103 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms