RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SP1P08047 785 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 RNF133Q8WVZ7 376 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 CFHR5Q9BXR6 569 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 WDR13Q9H1Z4 485 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 MS4A5Q9H3V2 200 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 C3orf80F5H4A9 247 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 K7ESF4 209 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 PHOX2AO14813 284 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 LGALS7P47929 136 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 SRSF5Q13243 272 aaKnown RBP16.86■□□□□ 0.29
COL27A1-207ENST00000494090 ZNF66Q6ZN08 573 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 C1orf174Q8IYL3 243 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 SCMH1Q96GD3 660 aa16.86■□□□□ 0.29
COL27A1-207ENST00000494090 PCDHGA9Q9Y5G4 932 aaKnown RBP16.86■□□□□ 0.29
COL27A1-207ENST00000494090 ZNF737O75373 536 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 GALR1P47211 349 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 CDC34P49427 236 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 MYPOPQ86VE0 399 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 SPINT1O43278 529 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 OR2J3O76001 311 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 RD3LP0DJH9 198 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 LGALSLQ3ZCW2 172 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 SMRP1Q8NCR6 262 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 LINC00052Q96N35 136 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 HSD17B10Q99714 261 aaKnown RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 IFT22Q9H7X7 185 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 RNF7Q9UBF6 113 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 LPAR3Q9UBY5 353 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 TCRBV16S1A1N1A0A5B0 115 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 ACAA2P42765 397 aaKnown RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 GNG4P50150 75 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 INO80CQ6PI98 192 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 PTPRZ1P23471 2315 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 MBPP02686 304 aaPredicted RBP16.85■□□□□ 0.29
COL27A1-207ENST00000494090 STRCP1A6NGW2 1772 aa16.85■□□□□ 0.29
COL27A1-207ENST00000494090 SNRPEP62304 92 aaKnown RBP16.84■□□□□ 0.29
COL27A1-207ENST00000494090 MPV17LQ2QL34 196 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 DHRS7BQ6IAN0 325 aaPredicted RBP16.84■□□□□ 0.29
COL27A1-207ENST00000494090 FAM24BQ8N5W8 94 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 MMP24Q9Y5R2 645 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 NUP214P35658 2090 aaPredicted RBP16.84■□□□□ 0.29
COL27A1-207ENST00000494090 KRTDAPP60985 99 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 SPCS3P61009 180 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 SLC2A8Q9NY64 477 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 LINC00862A6NCI5 91 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 CCL2P13500 99 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 IFITM3Q01628 133 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 FOXO1Q12778 655 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 TBC1D26Q86UD7 250 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 SMOC1Q9H4F8 434 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 TMEM167BQ9NRX6 74 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 J3QT63 122 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 FABP4P15090 132 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 ATP5SQ99766 215 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 SAP30LQ9HAJ7 183 aa16.84■□□□□ 0.29
COL27A1-207ENST00000494090 IGHV5-10-1A0A0J9YXX1 117 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 TMEM218A2RU14 115 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 TMEM210A6NLX4 147 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 ZNF716A6NP11 495 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 B4E171 279 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 F2RL2O00254 374 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 CCL4P13236 92 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 TSPAN7P41732 249 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 MMP16P51512 607 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 LINC00596Q86U02 117 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 TUSC5Q8IXB3 177 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 OR1L1Q8NH94 360 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 MMP7P09237 267 aaPredicted RBP16.83■□□□□ 0.29
COL27A1-207ENST00000494090 SFTPA2Q8IWL1 248 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 PPP1R3EQ9H7J1 279 aa16.83■□□□□ 0.29
COL27A1-207ENST00000494090 RBFOX3A6NFN3 312 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 MAGEA5P43359 124 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 POLR2GP62487 172 aaKnown RBP eCLIP16.83■□□□□ 0.282e-6■□□□□ 9.8
COL27A1-207ENST00000494090 TMEM52Q8NDY8 209 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 FBLIM1Q8WUP2 373 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 TMEM208Q9BTX3 173 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 C1QCP02747 245 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 GPR27Q9NS67 375 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 IGHV3-43A0A0B4J1X8 118 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 GATCO43716 136 aaKnown RBP16.83■□□□□ 0.28
COL27A1-207ENST00000494090 IGHV3-43DP0DP04 118 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 ZNF665Q9H7R5 613 aa16.83■□□□□ 0.28
COL27A1-207ENST00000494090 HOXD4P09016 255 aaPredicted RBP16.82■□□□□ 0.28
COL27A1-207ENST00000494090 ZBTB34Q8NCN2 500 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 OR10G4Q8NGN3 311 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 OR10G9Q8NGN4 311 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 OR10G7Q8NGN6 311 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 SP7Q8TDD2 431 aaPredicted RBP16.82■□□□□ 0.28
COL27A1-207ENST00000494090 TMEM37Q8WXS4 190 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 GMPPAQ96IJ6 420 aaPredicted RBP16.82■□□□□ 0.28
COL27A1-207ENST00000494090 HAND1O96004 215 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 ORM1P02763 201 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 HLA-DRB3P79483 266 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 TNXAQ16473 311 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 COL13A1Q5TAT6 717 aaPredicted RBP16.82■□□□□ 0.28
COL27A1-207ENST00000494090 FAM210BQ96KR6 192 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.82■□□□□ 0.28
COL27A1-207ENST00000494090 C7orf66A4D0T2 115 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 VSIG8P0DPA2 414 aa16.82■□□□□ 0.28
COL27A1-207ENST00000494090 SLC26A10Q8NG04 563 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms