RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 IGHV2-70P01814 119 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 GYPAP02724 150 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 LPLP06858 475 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 PAX1P15863 534 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 GABRA2P47869 451 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 GNG2P59768 71 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 ARFRP1Q13795 201 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 RBM39Q14498 530 aaKnown RBP9.53□□□□□ -0.88
MCF2L-231ENST00000494043 KCNJ8Q15842 424 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 DNM1P46Q6ZS02 220 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 PEG10Q86TG7 708 aaKnown RBP9.53□□□□□ -0.88
MCF2L-231ENST00000494043 OR8H2Q8N162 312 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 NEK7Q8TDX7 302 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 GPX8Q8TED1 209 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 FCAMRQ8WWV6 532 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 DYRK2Q92630 601 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 TRIM63Q969Q1 353 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 SDSLQ96GA7 329 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 GAFA1Q96PS6 74 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 DNTTIP1Q9H147 329 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 BARX1Q9HBU1 254 aaPredicted RBP9.53□□□□□ -0.88
MCF2L-231ENST00000494043 MYOZ1Q9NP98 299 aaPredicted RBP9.53□□□□□ -0.88
MCF2L-231ENST00000494043 AK3Q9UIJ7 227 aa9.53□□□□□ -0.88
MCF2L-231ENST00000494043 USF3Q68DE3 2245 aa9.52□□□□□ -0.88
MCF2L-231ENST00000494043 TMEM82A0PJX8 343 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TNFRSF13BO14836 293 aaPredicted RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 PPIHO43447 177 aaKnown RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 PSPNO60542 156 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ZNF737O75373 536 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 UPK1BO75841 260 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 CD3GP09693 182 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 CSF3P09919 207 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 IL7P13232 177 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 AMY2BP19961 511 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 MDH2P40926 338 aaKnown RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 OR3A1P47881 315 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TMEM33P57088 247 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 BAK1Q16611 211 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ATPAF1Q5TC12 328 aaPredicted RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 SHEQ5VZ18 495 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ZNF788Q6ZQV5 615 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 C17orf107Q6ZR85 190 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TRAPPC6BQ86SZ2 158 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 BPIFB2Q8N4F0 458 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ZNF561Q8N587 486 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ASCC1Q8N9N2 400 aaKnown RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 RAB1CQ92928 201 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TIMD4Q96H15 378 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 CCL13Q99616 98 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 CMSS1Q9BQ75 279 aaKnown RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TMEM246Q9BRR3 403 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 HDHD3Q9BSH5 251 aaPredicted RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 THAP7Q9BT49 309 aaPredicted RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 PPA2Q9H2U2 334 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ZNF665Q9H7R5 613 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 TMEM165Q9HC07 324 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ETAA1Q9NY74 926 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 RBMX2Q9Y388 322 aaKnown RBP9.52□□□□□ -0.89
MCF2L-231ENST00000494043 APCP25054 2843 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 ABCA12Q86UK0 2595 aa9.52□□□□□ -0.89
MCF2L-231ENST00000494043 UNC79Q9P2D8 2635 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 A0A1B0GW55 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 MEIS3P1A6NDR6 274 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 K7N7A8 449 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 SIGLEC5O15389 551 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 NDUFA2O43678 99 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 LANCL1O43813 399 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 CSN2P05814 226 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L2P0CJ85 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L3P0CJ86 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L4P0CJ87 422 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L5P0CJ88 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L6P0CJ89 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L7P0CJ90 424 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 SELLP14151 372 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 GDNFP39905 211 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 CBX5P45973 191 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 KCNJ3P48549 501 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 ATP5J2P56134 94 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 IL13RA1P78552 427 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 MRPS15P82914 257 aaKnown RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 SSBP1Q04837 148 aaKnown RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DCTN2Q13561 401 aaKnown RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 ATXN7L3Q14CW9 347 aaPredicted RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 CARTPTQ16568 116 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 AVPI1Q5T686 147 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 TRIQKQ629K1 86 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 C16orf87Q6PH81 154 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DUX4L9Q6RFH8 374 aaPredicted RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 DCDC5Q6ZRR9 648 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 MUC20Q8N307 709 aaPredicted RBP9.51□□□□□ -0.89
MCF2L-231ENST00000494043 ZNF525Q8N782 197 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 FAM216BQ8N7L0 139 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 OR4S1Q8NGB4 309 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 PPP1R35Q8TAP8 253 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 PLPPR1Q8TBJ4 325 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 MED30Q96HR3 178 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 SNX22Q96L94 193 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 OCSTAMPQ9BR26 566 aa9.51□□□□□ -0.89
MCF2L-231ENST00000494043 GSX2Q9BZM3 304 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms