RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 STOML3Q8TAV4 291 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 CASTOR1Q8WTX7 329 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 SEC22AQ96IW7 307 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 RSRP1Q9BUV0 290 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 SUCNR1Q9BXA5 334 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 DNTTIP1Q9H147 329 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 LIME1Q9H400 295 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 C12orf49Q9H741 205 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 CHMP1AQ9HD42 196 aaPredicted RBP9.18□□□□□ -0.94
USP4-214ENST00000491791 Q9N2K0 584 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 C1orf123Q9NWV4 160 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 CRIM1Q9NZV1 1036 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 ZNF581Q9P0T4 197 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 ZNF407Q9C0G0 2248 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 KIR2DS1A0A191URI9 304 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 MBD3L4A6NDZ8 208 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 MBD3L3A6NE82 208 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 MBD3L5A6NJ08 208 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 CYSRT1A8MQ03 144 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 IQCF6A8MYZ5 107 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 NPIPB11E5RHQ5 1161 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 TRAPPC2LH3BP13 241 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 J3QT63 122 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 CCSO14618 274 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 SHOXO15266 292 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 SMPD2O60906 423 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 TUSC2O75896 110 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 CGAP01215 116 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 IGLV1-44P01699 117 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 ZNF728P0DKX0 622 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 CCL2P13500 99 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 CCNOP22674 350 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 RBMXP38159 391 aaKnown RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 KIR2DS4P43632 304 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 HAAOP46952 286 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 KCNJ3P48549 501 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 GPM6AP51674 278 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 P2RX3P56373 397 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 PRSS12P56730 875 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 UBE2NP61088 152 aaKnown RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 SRSF1Q07955 248 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP4-214ENST00000491791 ZNF169Q14929 603 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 KIR2DS1Q14954 304 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 P2RY6Q15077 328 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 C3orf36Q3SXR2 165 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 ACSF3Q4G176 576 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 UNQ6126/PRO20091Q6UXV3 157 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 Q6ZS92 163 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 ZADH2Q8N4Q0 377 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 WDR31Q8NA23 367 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 INO80EQ8NBZ0 244 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 MBD3L2Q8NHZ7 208 aaPredicted RBP9.17□□□□□ -0.94
USP4-214ENST00000491791 MAFIPQ8WZ33 124 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 ST8SIA2Q92186 375 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 AQP10Q96PS8 301 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 MICU1Q9BPX6 476 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 NAA60Q9H7X0 242 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 MBD2Q9UBB5 411 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 KCNIP3Q9Y2W7 256 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 MEMO1Q9Y316 297 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 CNTRLQ7Z7A1 2325 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 DOPEY2Q9Y3R5 2298 aa9.17□□□□□ -0.94
USP4-214ENST00000491791 KANTRA0A1W2PQU2 76 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 LRP5LA4QPB2 252 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 C5orf51A6NDU8 294 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 MFSD2BA6NFX1 497 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 TMEM210A6NLX4 147 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 H0YIZ8 118 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 H7C1Q1 480 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 OR7C1O76099 320 aaPredicted RBP9.16□□□□□ -0.94
USP4-214ENST00000491791 PLATP00750 562 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 PET100P0DJ07 73 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 PGAM2P15259 253 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 OPRM1P35372 400 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 MDH2P40926 338 aaKnown RBP9.16□□□□□ -0.94
USP4-214ENST00000491791 GLP1RP43220 463 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 PPP1CBP62140 327 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 RBM39Q14498 530 aaKnown RBP9.16□□□□□ -0.94
USP4-214ENST00000491791 TMEM187Q14656 261 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 DEFB109BQ30KR1 87 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 C9orf106Q8NAJ2 232 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 LRRC20Q8TCA0 184 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 SLAMF9Q96A28 289 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 OR10C1Q96KK4 312 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 SYT3Q9BQG1 590 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 RTL8AQ9BWD3 113 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 REG4Q9BYZ8 158 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 ZNF442Q9H7R0 627 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 ZFP57Q9NU63 452 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 RASL12Q9NYN1 266 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 ATP23Q9Y6H3 246 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 NBASA2RRP1 2371 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 DNAJC13O75165 2243 aa9.16□□□□□ -0.94
USP4-214ENST00000491791 TRDCB7Z8K6 153 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 EEF1E1-BLOC1S5C9J1V9 151 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 SYNGR1O43759 233 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 TNFSF13O75888 250 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 PDGFAP04085 211 aa9.15□□□□□ -0.94
USP4-214ENST00000491791 HOXD4P09016 255 aaPredicted RBP9.15□□□□□ -0.94
USP4-214ENST00000491791 PI3P19957 117 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms