RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 ST3GAL6Q9Y274 331 aa13.36□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 hADV38S2A0JD32 116 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CSN2P05814 226 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GTF2F2P13984 249 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CCL3L1P16619 93 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PRTN3P24158 256 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ERP29P30040 261 aaKnown RBP13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 DLX1P56177 255 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 HILS1P60008 231 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SRSF2Q01130 221 aaKnown RBP13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GUCA2AQ02747 115 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PRB3Q04118 309 aaPredicted RBP13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 KLRD1Q13241 179 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 NCR3LG1Q68D85 454 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LINC00596Q86U02 117 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PDZD9Q8IXQ8 264 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TPRX1Q8N7U7 411 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SIGLECL1Q8N7X8 197 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 JMJD8Q96S16 334 aa13.35□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 JMJD1CQ15652 2540 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PP11 408 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 hCG_1809904A0A1W2PP81 198 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PPE2 198 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PR64 198 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRV1 198 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 FUOMA2VDF0 154 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 RNASEK-C17orf49H0YIS7 233 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CCRL2O00421 344 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 VENTXO95231 258 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 CALRP27797 417 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 P2RX3P56373 397 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 PAN3Q58A45 887 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 RBMS3Q6XE24 437 aaKnown RBP13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TCF23Q7RTU1 214 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TNFRSF14Q92956 283 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 ZNF48Q96MX3 618 aaPredicted RBP13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 GHRLQ9UBU3 117 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 SOX21Q9Y651 276 aaPredicted RBP13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 LINC00312Q9Y6C7 94 aa13.34□□□□□ -0.27
MSH5-SAPCD1-206ENST00000491552 TRAV24A0A0B4J272 114 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MEX3AA1L020 520 aaKnown RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 C17orf98A8MV24 154 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 HSPB6O14558 160 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 GEMIN2O14893 280 aaKnown RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 OR7C1O76099 320 aaPredicted RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 RBP4P02753 201 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ZNF728P0DKX0 622 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 DLX6P56179 175 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ERVFRD-1P60508 538 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 AESQ08117 197 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ATXN7L3Q14CW9 347 aaPredicted RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MPV17LQ2QL34 196 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 CD200R1LQ6Q8B3 271 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 C11orf42Q8N5U0 333 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 TMEM158Q8WZ71 300 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MRPS24Q96EL2 167 aaKnown RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 C1orf147Q96MC9 270 aaPredicted RBP13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ZNF714Q96N38 554 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 IFT22Q9H7X7 185 aa13.33□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MDFIC2A0A1B0GVS7 189 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 RNF212BA8MTL3 300 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 CRTAPO75718 401 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 TNFAIP8O95379 198 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 UBBP0CG47 229 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 GLIPR1P48060 266 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 UBE2E1P51965 193 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 DEFB112Q30KQ8 113 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 KRBOX4Q5JUW0 171 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 C1orf100Q5SVJ3 147 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 TRAPPC6BQ86SZ2 158 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 COQ2Q96H96 371 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 BANF2Q9H503 90 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ESM1Q9NQ30 184 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ING3Q9NXR8 418 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ZNF581Q9P0T4 197 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 UBE2J1Q9Y385 318 aaPredicted RBP13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MXRA5Q9NR99 2828 aa13.32□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 TRGV10A0A0A0MS01 117 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 TRDV1A0A1B0GX56 115 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRD5 423 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRF3 423 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 A0A1W2PRM7 423 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ODAMA1E959 279 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 NPFFO15130 113 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 CD37P11049 281 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 MGMTP16455 207 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 GALP22466 123 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 KCNJ3P48549 501 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 BAMBIQ13145 260 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 KRTAP24-1Q3LI83 254 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 HCP5Q6MZN7 132 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ZNF782Q6ZMW2 699 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 PIP4P2Q8N4L2 257 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 ZDHHC22Q8N966 263 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 SUMF2Q8NBJ7 301 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 OR6M1Q8NGM8 313 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 GFI1Q99684 422 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 DPCDQ9BVM2 203 aaPredicted RBP13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 CST11Q9H112 138 aa13.31□□□□□ -0.28
MSH5-SAPCD1-206ENST00000491552 HEXA-AS1Q9H8Q6 139 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms