RNA–Protein interactions for RNA: ENST00000481131.5

UPF3A-207, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 678 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-207ENST00000481131 P2RX4Q99571 388 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 SERPINI1Q99574 410 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 C1orf50Q9BV19 199 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 NUDT9Q9BW91 350 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 MRPL37Q9BZE1 423 aaKnown RBP3.32□□□□□ -1.88
UPF3A-207ENST00000481131 GEMIN7Q9H840 131 aaKnown RBP3.32□□□□□ -1.88
UPF3A-207ENST00000481131 PRTFDC1Q9NRG1 225 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 C14orf105Q9NVL8 296 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 PTTG3PQ9NZH4 202 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 MARCOQ9UEW3 520 aaPredicted RBP3.32□□□□□ -1.88
UPF3A-207ENST00000481131 SHPKQ9UHJ6 478 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 ASB4Q9Y574 426 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 DNAJC15Q9Y5T4 150 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 COL6A6A6NMZ7 2263 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 KALRNO60229 2985 aa3.32□□□□□ -1.88
UPF3A-207ENST00000481131 CFAP46Q8IYW2 2715 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 GTF3C1Q12789 2109 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 NINQ8N4C6 2090 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 GOLGA8QA0A0J9YX86 632 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 SERTM2A0A1B0GWG4 89 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 GNG14A0A1W2PPG7 69 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 TMEM114B3SHH9 223 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 PSMD12O00232 456 aaPredicted RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 DPM1O60762 260 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 CA11O75493 328 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 SEMA3DO95025 777 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 NEFHP12036 1026 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 GALP22466 123 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 OR4D2P58180 307 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 KRTAP12-2P59991 146 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 STX3Q13277 289 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 IMPG1Q17R60 797 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 C22orf42Q6IC83 251 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 REEP3Q6NUK4 255 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 C16orf47Q6ZP98 133 aaPredicted RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 CROCCP2Q86T23 111 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 OFCC1Q8IZS5 231 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 FDCSPQ8NFU4 85 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 OR4A4PQ8NGN8 299 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 C16orf78Q8WTQ4 265 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 ZNF75CPQ92670 426 aaPredicted RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 FAM104AQ969W3 186 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 PPWD1Q96BP3 646 aaKnown RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 TM4SF18Q96CE8 201 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 TSSK3Q96PN8 268 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 ING2Q9H160 280 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 STMN4Q9H169 189 aaPredicted RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 LYRM4Q9HD34 91 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 LYARQ9NX58 379 aaKnown RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 NKIRAS1Q9NYS0 192 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 VPS29Q9UBQ0 182 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 ZNF223Q9UK11 482 aaPredicted RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 NXT1Q9UKK6 140 aaKnown RBP3.31□□□□□ -1.88
UPF3A-207ENST00000481131 STK38LQ9Y2H1 464 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 SVILO95425 2214 aa3.31□□□□□ -1.88
UPF3A-207ENST00000481131 C11orf94C9JXX5 98 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 AIM2O14862 343 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 KLHL41O60662 606 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CTAG2O75638 210 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 MYO1DO94832 1006 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CLPSP04118 112 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 IFNA16P05015 189 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 FGF4P08620 206 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 DCKP27707 260 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 RRM2P31350 389 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 RPL14P50914 215 aaKnown RBP3.3□□□□□ -1.88
UPF3A-207ENST00000481131 SLC18A1P54219 525 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 NAA20P61599 178 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 SKP1P63208 163 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 C2orf80Q0P641 193 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 STX4Q12846 297 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CLINT1Q14677 625 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 ZSCAN26Q16670 478 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 SPIN4Q56A73 249 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 FAM71E1Q6IPT2 247 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 NOXRED1Q6NXP6 359 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 SLC48A1Q6P1K1 146 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 ZNF493Q6ZR52 646 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 NDUFAF7Q7L592 441 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 PAGE2Q7Z2X7 111 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 ZGRF1Q86YA3 2104 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CRLF3Q8IUI8 442 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 KRTCAP2Q8N6L1 136 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 APCDD1LQ8NCL9 501 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 PLPP5Q8NEB5 264 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 FAM81AQ8TBF8 368 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 DYDC1Q8WWB3 177 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 PSMF1Q92530 271 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CIDECQ96AQ7 238 aaPredicted RBP3.3□□□□□ -1.88
UPF3A-207ENST00000481131 EXOSC8Q96B26 276 aaKnown RBP3.3□□□□□ -1.88
UPF3A-207ENST00000481131 C19orf60Q96EN9 201 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CATSPER2Q96P56 530 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 OR52B2Q96RD2 323 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 SLC25A39Q9BZJ4 359 aaPredicted RBP3.3□□□□□ -1.88
UPF3A-207ENST00000481131 OR8D2Q9GZM6 311 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 WDR55Q9H6Y2 383 aaPredicted RBP3.3□□□□□ -1.88
UPF3A-207ENST00000481131 LRTM1Q9HBL6 345 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 C1orf109Q9NX04 203 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 CES1P1Q9UKY3 287 aa3.3□□□□□ -1.88
UPF3A-207ENST00000481131 ST3GAL6Q9Y274 331 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms