RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 SLC25A40Q8TBP6 338 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 FAM57AQ8TBR7 257 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 KLF14Q8TD94 323 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 SCARB1Q8WTV0 552 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 SLAMF9Q96A28 289 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 C2orf50Q96LR7 162 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 NRIP2Q9BQI9 281 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 HDHD3Q9BSH5 251 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 DPCDQ9BVM2 203 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 COL25A1Q9BXS0 654 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 OR2J1Q9GZK6 312 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 ARL6Q9H0F7 186 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 HES4Q9HCC6 221 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 CHMP1AQ9HD42 196 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 TMEM100Q9NV29 134 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 DNAJB11Q9UBS4 358 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 ZNF629Q9UEG4 869 aaPredicted RBP6.49□□□□□ -1.37
COL6A3-208ENST00000468792 PCDHB10Q9UN67 800 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 WASF3Q9UPY6 502 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 MEMO1Q9Y316 297 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 SLC25A15Q9Y619 301 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 AKAP13Q12802 2813 aa6.49□□□□□ -1.37
COL6A3-208ENST00000468792 FXYD6-FXYD2A0A087WZ82 144 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 TRAV24A0A0B4J272 114 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 DUXBA0A1W2PPF3 345 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ANKRD34BA5PLL1 514 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 RNF222A6NCQ9 220 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 RNF223E7ERA6 249 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 F8VVB4 439 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 F8VWA3 439 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ERVH48-1M5A8F1 160 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SYNGR1O43759 233 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 LILRA1O75019 489 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 PDGFAP04085 211 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 TK1P04183 234 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CELA3BP08861 270 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CECR9P0C854 216 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 PGAM2P15259 253 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 IL32P24001 234 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SSTR2P30874 369 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 FCGR2CP31995 323 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 OPRM1P35372 400 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SERPINF1P36955 418 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CFHR2P36980 270 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 RBMXP38159 391 aaKnown RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 UBA52P62987 128 aaKnown RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 NAAAQ02083 359 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 GTF3C1Q12789 2109 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 FOXF2Q12947 444 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ANKRD55Q3KP44 614 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ZNF718Q3SXZ3 478 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ZNF585AQ6P3V2 769 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 PRSS54Q6PEW0 395 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SLC22A25Q6T423 547 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 FIP1L1Q6UN15 594 aaKnown RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 Q6ZPA2 131 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 MYPOPQ86VE0 399 aaPredicted RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CXorf67Q86X51 503 aaPredicted RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 LDLRAD3Q86YD5 345 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ZNF610Q8N9Z0 462 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SUMF2Q8NBJ7 301 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 POC1AQ8NBT0 407 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 SCCPDHQ8NBX0 429 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 INO80EQ8NBZ0 244 aaPredicted RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 OR4A4PQ8NGN8 299 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 OR1J1Q8NGS3 322 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 LILRB1Q8NHL6 650 aaPredicted RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CASTOR1Q8WTX7 329 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 MAFIPQ8WZ33 124 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CABLES2Q9BTV7 478 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 FXYD6Q9H0Q3 95 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 WDR13Q9H1Z4 485 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 CXXC4Q9H2H0 198 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 PIGMQ9H3S5 423 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 LIME1Q9H400 295 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 NAA60Q9H7X0 242 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 ZNF581Q9P0T4 197 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 TUBD1Q9UJT1 453 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 PURGQ9UJV8 347 aaKnown RBP6.48□□□□□ -1.37
COL6A3-208ENST00000468792 FAM215AQ9Y5M1 114 aa6.48□□□□□ -1.37
COL6A3-208ENST00000468792 URB1O60287 2271 aaKnown RBP6.47□□□□□ -1.37
COL6A3-208ENST00000468792 ANKRD11Q6UB99 2663 aaPredicted RBP6.47□□□□□ -1.37
COL6A3-208ENST00000468792 SHANK1Q9Y566 2161 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 IGHV2OR16-5A0A0B4J2B6 119 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 IGHV1-18A0A0C4DH31 117 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 TEX13DA0A0J9YY54 714 aaPredicted RBP6.47□□□□□ -1.37
COL6A3-208ENST00000468792 KANTRA0A1W2PQU2 76 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 C5orf51A6NDU8 294 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 K7ENP7 123 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 IFNL4K9M1U5 179 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 DEGS1O15121 323 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 BCL2L11O43521 198 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 TSC22D2O75157 780 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 CFDP00746 253 aaPredicted RBP6.47□□□□□ -1.37
COL6A3-208ENST00000468792 PPYP01298 95 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 IFNA21P01568 189 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 RRASP10301 218 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 PRKACAP17612 351 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 PIGPP57054 158 aa6.47□□□□□ -1.37
COL6A3-208ENST00000468792 HERV-K104P61576 105 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 207 ms