RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SS18L1O75177 396 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 MED6O75586 246 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 F12P00748 615 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 SCTP09683 121 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 COX5BP10606 129 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 ID4P47928 161 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 FGF12P61328 243 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 PJVKQ0ZLH3 352 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF169Q14929 603 aaPredicted RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 TSC22D1Q15714 1073 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 IGFBP7Q16270 282 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 HES3Q5TGS1 186 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM268Q5VZI3 342 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 MEX3BQ6ZN04 569 aaKnown RBP7.67□□□□□ -1.18
SYNE1-217ENST00000466159 VASH2Q86V25 355 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 MCEMP1Q8IX19 187 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 LRTM2Q8N967 370 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 MDS2Q8NDY4 140 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 ZNF488Q96MN9 340 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 GPHA2Q96T91 129 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 TLNRD1Q9H1K6 362 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 TREM1Q9NP99 234 aa7.67□□□□□ -1.18
SYNE1-217ENST00000466159 CD300LBA8K4G0 201 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 F8W036 122 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 GNRHRP30968 328 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 ARR3P36575 388 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 PMELP40967 661 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 WNT5AP41221 380 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 EIF5AP63241 154 aaKnown RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 BLOC1S1P78537 153 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 SLC10A1Q14973 349 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 RNPS1Q15287 305 aaKnown RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 LGI3Q8N145 548 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 IL22RA1Q8N6P7 574 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 SLC35G3Q8N808 338 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 SAT2Q96F10 170 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 RNF122Q9H9V4 155 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 Q9N2K0 584 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 KLF13Q9Y2Y9 288 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 MED12LQ86YW9 2145 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A10PA6NDY2 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A18PA6NE21 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A16PA6NEW6 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A20PA6NIJ5 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A8PA6NJQ4 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A7PA6NKC0 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A22PA8MWA6 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A12PA8MX19 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A5PA8MXJ8 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A23PA8MXZ1 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 E5RGE8 158 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 TRAPPC2LH3BP13 241 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 KLRC4-KLRK1H3BQV0 150 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 AGPAT2O15120 278 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 MPPED1O15442 326 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 JTBO76095 146 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 IL18BPO95998 194 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 NAPSAO96009 420 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A15PP0C7V4 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A13PP0C7W8 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A14PP0C7W9 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FAM90A24PP0C7X0 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 SULT1A2P50226 295 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 PLP2Q04941 152 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 HERPUD1Q15011 391 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 TGIF1Q15583 401 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 RNFT1Q5M7Z0 435 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 EIF5AL1Q6IS14 154 aaKnown RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 HAGHLQ6PII5 290 aaPredicted RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 FBXW12Q6X9E4 464 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 NEK7Q8TDX7 302 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 SECTM1Q8WVN6 248 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 PARP12Q9H0J9 701 aaKnown RBP7.66□□□□□ -1.18
SYNE1-217ENST00000466159 PLEKHA2Q9HB19 425 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 RHOFQ9HBH0 211 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 PLSCR2Q9NRY7 297 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 UQCC1Q9NVA1 299 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 ZDHHC8Q9ULC8 765 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 NSG2Q9Y328 171 aa7.66□□□□□ -1.18
SYNE1-217ENST00000466159 C3orf85A0A1B0GTC6 90 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 GAPDHP04406 335 aaKnown RBP7.65□□□□□ -1.18
SYNE1-217ENST00000466159 MUC1P15941 1255 aaPredicted RBP7.65□□□□□ -1.18
SYNE1-217ENST00000466159 PRKACAP17612 351 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 SPIN3Q5JUX0 258 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 TMEM88Q6PEY1 159 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 IL34Q6ZMJ4 242 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 LDLRAD3Q86YD5 345 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 MKXQ8IYA7 352 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 SAXO1Q8IYX7 474 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 SVBPQ8N300 66 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 CCDC71LQ8N9Z2 235 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 OR5A2Q8NGI9 324 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 LOXL4Q96JB6 756 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 FER1L6-AS2Q96M78 137 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 HIST1H2AAQ96QV6 131 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 WFDC1Q9HC57 220 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 RCC2Q9P258 522 aaKnown RBP7.65□□□□□ -1.18
SYNE1-217ENST00000466159 IGKV1D-13A0A0B4J2D9 117 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 ARGFXA6NJG6 315 aa7.65□□□□□ -1.18
SYNE1-217ENST00000466159 NUDT19A8MXV4 375 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms