RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 PSPNO60542 156 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 CSN2P05814 226 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A15PP0C7V4 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A13PP0C7W8 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A14PP0C7W9 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 FAM90A24PP0C7X0 464 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 CD37P11049 281 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 ARSBP15848 533 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 MGMTP16455 207 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 GADD45AP24522 165 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 KCNJ3P48549 501 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 ARF6P62330 175 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 PDCD1Q15116 288 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 PAN3Q58A45 887 aaKnown RBP16.34■□□□□ 0.21
COL9A3-204ENST00000463487 Q6P435 159 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 C17orf107Q6ZR85 190 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 UPRTQ96BW1 309 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 POM121Q96HA1 1249 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 PCGF1Q9BSM1 259 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 SELENOIQ9C0D9 397 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 PPA2Q9H2U2 334 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 OPN4Q9UHM6 478 aa16.34■□□□□ 0.21
COL9A3-204ENST00000463487 NSD1Q96L73 2696 aaPredicted RBP16.33■□□□□ 0.21
COL9A3-204ENST00000463487 GEMIN2O14893 280 aaKnown RBP16.33■□□□□ 0.2
COL9A3-204ENST00000463487 IFNA2P01563 188 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 ERP29P30040 261 aaKnown RBP16.33■□□□□ 0.2
COL9A3-204ENST00000463487 OR3A1P47881 315 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 C1orf122Q6ZSJ8 110 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 OR4S1Q8NGB4 309 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 OR4M1Q8NGD0 313 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 TMEM59Q9BXS4 323 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 C19orf12Q9NSK7 152 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 STEAP1Q9UHE8 339 aa16.33■□□□□ 0.2
COL9A3-204ENST00000463487 AIREO43918 545 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 MPIG6BO95866 241 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 AVPP01185 164 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 P2RX3P56373 397 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 RIPPLY3P57055 190 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 FAM189A2Q15884 450 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 TAF9Q16594 264 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 ATAD3CQ5T2N8 411 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 GPR157Q5UAW9 335 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 OR2W3Q7Z3T1 314 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 NEK7Q8TDX7 302 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 FAM46BQ96A09 425 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 C1orf147Q96MC9 270 aaPredicted RBP16.32■□□□□ 0.2
COL9A3-204ENST00000463487 URM1Q9BTM9 101 aaKnown RBP16.32■□□□□ 0.2
COL9A3-204ENST00000463487 BARHL1Q9BZE3 327 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 BANF2Q9H503 90 aa16.32■□□□□ 0.2
COL9A3-204ENST00000463487 METTL8Q9H825 291 aaKnown RBP16.32■□□□□ 0.2
COL9A3-204ENST00000463487 A0A1W2PP11 408 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 IFITM5A6NNB3 132 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 HSPB6O14558 160 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 SMIM18P0DKX4 95 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 VSIG8P0DPA2 414 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 FPR2P25090 351 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 BPIFB3P59826 476 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 RBM39Q14498 530 aaKnown RBP16.31■□□□□ 0.2
COL9A3-204ENST00000463487 KRBOX4Q5JUW0 171 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 TMEM200BQ69YZ2 307 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 C1orf229Q6ZS94 237 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-204ENST00000463487 TRAPPC6BQ86SZ2 158 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 YIPF6Q96EC8 236 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 Q96M66 194 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 GFI1Q99684 422 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 DPCDQ9BVM2 203 aaPredicted RBP16.31■□□□□ 0.2
COL9A3-204ENST00000463487 SIRPDQ9H106 197 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 NUP50Q9UKX7 468 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 LINC00312Q9Y6C7 94 aa16.31■□□□□ 0.2
COL9A3-204ENST00000463487 FN1P02751 2386 aaKnown RBP16.31■□□□□ 0.2
COL9A3-204ENST00000463487 TRGV10A0A0A0MS01 117 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 TRAV40A0A0B4J280 105 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 NOTOA8MTQ0 251 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 MCRIP1C9JLW8 97 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 AIPO00170 330 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 MMP9P14780 707 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 CFPP27918 469 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 GUCA2AQ02747 115 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 ATXN7L3Q14CW9 347 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-204ENST00000463487 P2RY14Q15391 338 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 HES5Q5TA89 166 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 NCR3LG1Q68D85 454 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 SUMF2Q8NBJ7 301 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 TMEM104Q8NE00 496 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 FAM3DQ96BQ1 224 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 OR6C3Q9NZP0 311 aa16.3■□□□□ 0.2
COL9A3-204ENST00000463487 UBE2J1Q9Y385 318 aaPredicted RBP16.3■□□□□ 0.2
COL9A3-204ENST00000463487 TRAV24A0A0B4J272 114 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 RBP4P02753 201 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 EPHA1P21709 976 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 OR10A3P58181 314 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 AESQ08117 197 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 VMO1Q7Z5L0 202 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 OR13F1Q8NGS4 319 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 SLC25A28Q96A46 364 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 ZNF714Q96N38 554 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 NEDD4LQ96PU5 975 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 MS4A7Q9GZW8 240 aaPredicted RBP16.29■□□□□ 0.2
COL9A3-204ENST00000463487 GAL3ST2Q9H3Q3 398 aa16.29■□□□□ 0.2
COL9A3-204ENST00000463487 SHISA3A0PJX4 238 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms