RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 RFKQ969G6 155 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 COQ2Q96H96 371 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 HHLA2Q9UM44 414 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 COL7A1Q02388 2944 aa12.82□□□□□ -0.36
COL7A1-204ENST00000462475 FUOMA2VDF0 154 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 LY6LH3BQJ8 138 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 BUB1B-PAK6H3BSN5 160 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 SLC16A6O15403 523 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 OCM2P0CE71 109 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 OCMP0CE72 109 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-204ENST00000462475 FCGR1AP12314 374 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 LMO1P25800 156 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 OR3A4PP47883 348 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 ARHGDIBP52566 201 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 KRTAP10-11P60412 298 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 SCN1BQ07699 218 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 KPNB1Q14974 876 aaKnown RBP12.81□□□□□ -0.36
COL7A1-204ENST00000462475 ATXN7L3Q14CW9 347 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-204ENST00000462475 Q6P435 159 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 FDX2Q6P4F2 183 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 OR13C3Q8NGS6 347 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 PPIL3Q9H2H8 161 aaKnown RBP12.81□□□□□ -0.36
COL7A1-204ENST00000462475 INPP5EQ9NRR6 644 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 RYR3Q15413 4870 aa12.81□□□□□ -0.36
COL7A1-204ENST00000462475 SAC3D1A6NKF1 404 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 J3QRE1 110 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 SLC33A1O00400 549 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-204ENST00000462475 TOR1AO14656 332 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 MT-ND2P03891 347 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 CSN2P05814 226 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 BNIP1Q12981 228 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 RBM39Q14498 530 aaKnown RBP12.8□□□□□ -0.36
COL7A1-204ENST00000462475 C17orf58Q2M2W7 97 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 C9orf152Q5JTZ5 239 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 KRBOX4Q5JUW0 171 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 C1orf146Q5VVC0 180 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 OR4D6Q8NGJ1 314 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 RNFT2Q96EX2 444 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 RCC1LQ96I51 464 aaKnown RBP12.8□□□□□ -0.36
COL7A1-204ENST00000462475 OSBPL10Q9BXB5 764 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 NEK6Q9HC98 313 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 PCDHGB5Q9Y5G0 923 aa12.8□□□□□ -0.36
COL7A1-204ENST00000462475 A0A087X0M5 115 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 A0A1B0GX30 115 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 WI2-2373I1.2A0A1W2PRP0 233 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 DAPL1A0PJW8 107 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 OR4C45A6NMZ5 311 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 HTR1AP08908 422 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CEACAM3P40198 252 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CCR9P51686 369 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CDK5R1Q15078 307 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 C11orf87Q6NUJ2 197 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 KCTD20Q7Z5Y7 419 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 OSR2Q8N2R0 312 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CHST4Q8NCG5 386 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CREB3L1Q96BA8 519 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 PELI1Q96FA3 418 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 CENPNQ96H22 339 aaPredicted RBP12.79□□□□□ -0.36
COL7A1-204ENST00000462475 IMPAD1Q9NX62 359 aa12.79□□□□□ -0.36
COL7A1-204ENST00000462475 ZNF729A6NN14 1252 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-204ENST00000462475 J3QLW9 94 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 HSPB6O14558 160 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 ZNF19P17023 458 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 NFYBP25208 207 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 HOXD3P31249 432 aaPredicted RBP12.78□□□□□ -0.36
COL7A1-204ENST00000462475 MNDAP41218 407 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 ZP1P60852 638 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 ZSCAN26Q16670 478 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 VAX1Q5SQQ9 334 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 CCDC144NLQ6NUI1 221 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 ETV3LQ6ZN32 361 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 SAXO1Q8IYX7 474 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 LINC00482Q8N8I6 264 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 KIRREL1Q96J84 757 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 C4orf36Q96KX1 117 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 ZCCHC4Q9H5U6 513 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 MYRFQ9Y2G1 1151 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 MOB4Q9Y3A3 225 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 HSPE1-MOB4S4R3N1 261 aa12.78□□□□□ -0.36
COL7A1-204ENST00000462475 KIAA2026Q5HYC2 2103 aa12.77□□□□□ -0.36
COL7A1-204ENST00000462475 KBTBD11-OT1A0A1B0GTJ5 212 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 ERICH4A6NGS2 130 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 OOSP1A8MZH6 123 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 M0QZK8 103 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 EBAG9O00559 213 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 DEGS1O15121 323 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 CLIC3O95833 236 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 IGHV3-7P01780 117 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 SNRNP70P08621 437 aaKnown RBP12.77□□□□□ -0.37
COL7A1-204ENST00000462475 GLP1RP43220 463 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 PRRX1P54821 245 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 ALKBH1Q13686 389 aaKnown RBP12.77□□□□□ -0.37
COL7A1-204ENST00000462475 ZNF329Q86UD4 541 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 OR13A1Q8NGR1 328 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 OR56B4Q8NH76 319 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 OR9G1Q8NH87 305 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 TRUB1Q8WWH5 349 aaKnown RBP12.77□□□□□ -0.37
COL7A1-204ENST00000462475 LEAP2Q969E1 77 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 TOMM40LQ969M1 308 aa12.77□□□□□ -0.37
COL7A1-204ENST00000462475 RPEQ96AT9 228 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms