RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 VOPP1Q96AW1 172 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PINX1Q96BK5 328 aaKnown RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 GPR137Q96N19 417 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 NPTNQ9Y639 398 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 GOLGB1Q14789 3259 aaKnown RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 FANCMQ8IYD8 2048 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 TRAV39A0A0B4J263 110 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 NCBP2LA6PVI3 153 aaKnown RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 TPPPO94811 219 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 GZMHP20718 246 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 KHDC1LQ5JSQ8 128 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 ZBTB37Q5TC79 503 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 DYRK2Q92630 601 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 WDR89Q96FK6 387 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 GNB4Q9HAV0 340 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PPP1R14DQ9NXH3 145 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PPIAL4EA0A075B759 164 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 C3orf85A0A1B0GTC6 90 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PPIAL4DF5H284 164 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 SFT2D2O95562 160 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 HRASP01112 189 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PPIAL4FP0DN26 164 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 S100A2P29034 98 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 CD80P33681 288 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 LPAR6P43657 344 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 ELLP55199 621 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 BTNL3Q6UXE8 466 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 LINC00596Q86U02 117 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 MUC20Q8N307 709 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 KLF14Q8TD94 323 aaPredicted RBP6.42□□□□□ -1.38
SYNE1-213ENST00000448038 ZNRF4Q8WWF5 429 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PTX4Q96A99 478 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 DIRC2Q96SL1 478 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 CACFD1Q9UGQ2 172 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 PPIAL4AQ9Y536 164 aa6.42□□□□□ -1.38
SYNE1-213ENST00000448038 TAAR5O14804 337 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 LYPD3O95274 346 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CT45A6P0DMU7 189 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CT45A5P0DMU8 189 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CT45A7P0DMV0 189 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 PMELP40967 661 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 RAG2P55895 527 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ENDOGQ14249 297 aaKnown RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ST3GAL2Q16842 350 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CT45A1Q5HYN5 189 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CD200R1LQ6Q8B3 271 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 Q6ZRG5 221 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CT45A3Q8NHU0 189 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ITLN1Q8WWA0 313 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 NAA60Q9H7X0 242 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CACNA1GO43497 2377 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 TRBV5-7A0A0A0MS05 114 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 LY6G6EA0A0G2JKS1 128 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 A0A1W2PP11 408 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 C9orf170A2RU37 121 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CLEC18AA5D8T8 446 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CA11O75493 328 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 JTBO76095 146 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CPN1P15169 458 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 KLK2P20151 261 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CHATP28329 748 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 AESQ08117 197 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 FAM27E3Q08E93 113 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ACSF3Q4G176 576 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF385CQ66K41 422 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ASCL5Q7RTU5 278 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CLEC18CQ8NCF0 446 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 OR8G5Q8NG78 346 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 NANPQ8TBE9 248 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 TMED3Q9Y3Q3 217 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 WIPI2Q9Y4P8 454 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 U3KQA8 63 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 LRRC3CA6NJW4 275 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 H3BP45 60 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 RPL36A-HNRNPH2H7BZ11 118 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 PIN1P1O15428 100 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 SSX4O60224 188 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 TSPAN9O75954 239 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 CLPSP04118 112 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 DTYMKP23919 212 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 PRDX2P32119 198 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 Q0VFX4 171 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 FDX2Q6P4F2 183 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 NPAS1Q99742 590 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ELOVL5Q9NYP7 299 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 SF3B6Q9Y3B4 125 aaKnown RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 A0A1W2PRD5 423 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 A0A1W2PRF3 423 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 A0A1W2PRM7 423 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 NPIPB7O75200 414 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 FABP1P07148 127 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 OR5AC1P0C628 307 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 FAM3AP98173 230 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 ZNF826PQ6ZT77 177 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 THNSL2Q86YJ6 484 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 POM121L2Q96KW2 1035 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 HDHD3Q9BSH5 251 aaPredicted RBP6.41□□□□□ -1.38
SYNE1-213ENST00000448038 MARVELD1Q9BSK0 173 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 RPH3ALQ9UNE2 315 aa6.41□□□□□ -1.38
SYNE1-213ENST00000448038 RCL1Q9Y2P8 373 aaKnown RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms