RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 C1orf122Q6ZSJ8 110 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 C9orf139Q6ZV77 190 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 USP43Q70EL4 1123 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 TRAPPC6BQ86SZ2 158 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 LRRTM1Q86UE6 522 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 PNKDQ8N490 385 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 NKAIN3Q8N8D7 197 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 OR4D6Q8NGJ1 314 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 OR51T1Q8NGJ9 327 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 SLITRK2Q9H156 845 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 ESM1Q9NQ30 184 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 IL36GQ9NZH8 169 aa15.29■□□□□ 0.04
SHH-204ENST00000441114 hADV38S2A0JD32 116 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 UCHL1P09936 223 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 PRTN3P24158 256 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 PSMA1P25786 263 aaKnown RBP15.28■□□□□ 0.04
SHH-204ENST00000441114 PSMB9P28065 219 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 GUCA2AQ02747 115 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 MEF2CQ06413 473 aaPredicted RBP15.28■□□□□ 0.04
SHH-204ENST00000441114 IL13RA2Q14627 380 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 ATXN7L3Q14CW9 347 aaPredicted RBP15.28■□□□□ 0.04
SHH-204ENST00000441114 SSX1Q16384 188 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 PAN3Q58A45 887 aaKnown RBP15.28■□□□□ 0.04
SHH-204ENST00000441114 ZNF782Q6ZMW2 699 aaPredicted RBP15.28■□□□□ 0.04
SHH-204ENST00000441114 CDH26Q8IXH8 852 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 ZDHHC22Q8N966 263 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 CHST4Q8NCG5 386 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 Q8NFD4 153 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 TNFRSF14Q92956 283 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 PCDHB16Q9NRJ7 776 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 ZNF581Q9P0T4 197 aa15.28■□□□□ 0.04
SHH-204ENST00000441114 A0A0U1RQK1 487 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 hCG_1809904A0A1W2PP81 198 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PPE2 198 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PR64 198 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 A0A1W2PRV1 198 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 ZNF780AO75290 641 aaPredicted RBP15.27■□□□□ 0.04
SHH-204ENST00000441114 ZNF728P0DKX0 622 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 COX7A1P24310 79 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 GABRA5P31644 462 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 GLIPR1P48060 266 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 P2RX3P56373 397 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 RBM11P57052 281 aaKnown RBP15.27■□□□□ 0.04
SHH-204ENST00000441114 GPR176Q14439 515 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 KRBOX4Q5JUW0 171 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 GLT8D1Q68CQ7 371 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 NCR3LG1Q68D85 454 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 PIP4P2Q8N4L2 257 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 C11orf42Q8N5U0 333 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 PHYHIPQ92561 330 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 ZNF714Q96N38 554 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 BANF2Q9H503 90 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 TNFRSF19Q9NS68 423 aa15.27■□□□□ 0.04
SHH-204ENST00000441114 TRAV24A0A0B4J272 114 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 FUOMA2VDF0 154 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 DNAJC9-AS1A6NH13 148 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 TRIM77I1YAP6 450 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 GEMIN2O14893 280 aaKnown RBP15.26■□□□□ 0.03
SHH-204ENST00000441114 NPFFO15130 113 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 OR7C1O76099 320 aaPredicted RBP15.26■□□□□ 0.03
SHH-204ENST00000441114 GTF2F2P13984 249 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 DLX6P56179 175 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 ATAD3CQ5T2N8 411 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 UBE2UQ5VVX9 321 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 ZNF773Q6PK81 442 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 TCF23Q7RTU1 214 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 LYPD6Q86Y78 171 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 UQCC2Q9BRT2 126 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 C19orf24Q9BVV8 132 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 FAM96BQ9Y3D0 163 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 AK6Q9Y3D8 172 aaKnown RBP15.26■□□□□ 0.03
SHH-204ENST00000441114 LINC00312Q9Y6C7 94 aa15.26■□□□□ 0.03
SHH-204ENST00000441114 KIAA2026Q5HYC2 2103 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 C17orf98A8MV24 154 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 CRTAPO75718 401 aaPredicted RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 ARL6IP5O75915 188 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 CALRP27797 417 aaKnown RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 ERP29P30040 261 aaKnown RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 UBE2E1P51965 193 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 TAF9Q16594 264 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 TUSC1Q2TAM9 212 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 HCP5Q6MZN7 132 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 BRICD5Q6PL45 260 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 SUMF2Q8NBJ7 301 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 FAM46BQ96A09 425 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 FOXRED1Q96CU9 486 aaPredicted RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 COQ2Q96H96 371 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 SELENOIQ9C0D9 397 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 HEXA-AS1Q9H8Q6 139 aa15.25■□□□□ 0.03
SHH-204ENST00000441114 UNKLQ9H9P5 680 aaKnown RBP15.25■□□□□ 0.03
SHH-204ENST00000441114 TRGV10A0A0A0MS01 117 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 MEIOCA2RUB1 952 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 CCRL2O00421 344 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 HOXA3O43365 443 aaPredicted RBP15.24■□□□□ 0.03
SHH-204ENST00000441114 UBA52P62987 128 aaKnown RBP15.24■□□□□ 0.03
SHH-204ENST00000441114 NHLRC3Q5JS37 347 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 TMEM104Q8NE00 496 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 NEK7Q8TDX7 302 aa15.24■□□□□ 0.03
SHH-204ENST00000441114 FCGR1BQ92637 280 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms