RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 IL36RNQ9UBH0 155 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 DOCK10Q96BY6 2186 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 A0A1B0GV50 99 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 C5orf49A4QMS7 147 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 NKX2-6A6NCS4 301 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 HLA-HP01893 362 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 CELA3AP09093 270 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 HOXA1P49639 335 aaPredicted RBP10.16□□□□□ -0.78
CD44-209ENST00000433892 FOXG1P55316 489 aaPredicted RBP10.16□□□□□ -0.78
CD44-209ENST00000433892 GUK1Q16774 197 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 OR4D5Q8NGN0 318 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 PSMF1Q92530 271 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 CLCC1Q96S66 551 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 USB1Q9BQ65 265 aaKnown RBP10.16□□□□□ -0.78
CD44-209ENST00000433892 SMCO4Q9NRQ5 59 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 C19orf12Q9NSK7 152 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 LRFN1Q9P244 771 aa10.16□□□□□ -0.78
CD44-209ENST00000433892 RPL36A-HNRNPH2H7BZ11 118 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 SERPINA7P05543 415 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 SCTP09683 121 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 PRDX4Q13162 271 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 GNMTQ14749 295 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 LPAL2Q16609 132 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 C6orf15Q6UXA7 325 aaPredicted RBP10.15□□□□□ -0.78
CD44-209ENST00000433892 COLCA1Q6ZS62 124 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 DPPA2Q7Z7J5 298 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 TBC1D26Q86UD7 250 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 C14orf79Q96F83 325 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 SCRT1Q9BWW7 348 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 TMEM222Q9H0R3 208 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 RPS10P5Q9NQ39 176 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 PRDM6Q9NQX0 595 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 BIN3Q9NQY0 253 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 UBE2J1Q9Y385 318 aaPredicted RBP10.15□□□□□ -0.78
CD44-209ENST00000433892 RFNGQ9Y644 331 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 KPTNQ9Y664 436 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 PCSK5Q92824 1860 aa10.15□□□□□ -0.78
CD44-209ENST00000433892 PQLC2LA1A4F0 135 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 FAM24AA6NFZ4 105 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 B4E171 279 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 LAMTOR5O43504 91 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 SPINK2P20155 84 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TSPAN7P41732 249 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 POLR2GP62487 172 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-209ENST00000433892 EWSR1Q01844 656 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-209ENST00000433892 CLINT1Q14677 625 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 SSPNQ14714 243 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 PEAR1Q5VY43 1037 aaPredicted RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 TMEM182Q6ZP80 229 aaPredicted RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 BOD1Q96IK1 185 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 REPIN1Q9BWE0 567 aaKnown RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 HES7Q9BYE0 225 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 PRRG4Q9BZD6 226 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 CALHM2Q9HA72 323 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 PLSCR2Q9NRY7 297 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 MRPS18CQ9Y3D5 142 aaKnown RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 LOXL2Q9Y4K0 774 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 ZNF503-AS2A6NEH8 195 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 ZNF98A6NK75 572 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TRDCB7Z8K6 153 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TK1P04183 234 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 SNRNP70P08621 437 aaKnown RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 OMGP23515 440 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TSC22D1Q15714 1073 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 ZNF818PQ6ZRF7 136 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 ZNF695Q8IW36 515 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TUSC5Q8IXB3 177 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 GAPTQ8N292 157 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 OR2C3Q8N628 320 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 TMEM45BQ96B21 275 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 THOC3Q96J01 351 aaKnown RBP10.14□□□□□ -0.79
CD44-209ENST00000433892 IER2Q9BTL4 223 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 C20orf24Q9BUV8 137 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 MAGT1Q9H0U3 335 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 SPACA1Q9HBV2 294 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 ZNF407Q9C0G0 2248 aa10.14□□□□□ -0.79
CD44-209ENST00000433892 PMELP40967 661 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 NKX2-1P43699 371 aaPredicted RBP10.13□□□□□ -0.79
CD44-209ENST00000433892 UCP2P55851 309 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 HERPUD1Q15011 391 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 AWAT1Q58HT5 328 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 CXorf66Q5JRM2 361 aaPredicted RBP10.13□□□□□ -0.79
CD44-209ENST00000433892 SHEQ5VZ18 495 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 TMEM105Q8N8V8 129 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 ZNF565Q8N9K5 539 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 Q8NFD4 153 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 FAM213BQ8TBF2 198 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 NEK7Q8TDX7 302 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 IP6K3Q96PC2 410 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 SIGLEC12Q96PQ1 595 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 CDX2Q99626 313 aaPredicted RBP10.13□□□□□ -0.79
CD44-209ENST00000433892 Q9N2K0 584 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 FAM86C1Q9NVL1 165 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 MTCH1Q9NZJ7 389 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 BOKQ9UMX3 212 aaPredicted RBP10.13□□□□□ -0.79
CD44-209ENST00000433892 FBXO7Q9Y3I1 522 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 IGKV3D-15A0A087WSY6 115 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 IGKV1D-13A0A0B4J2D9 117 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 ZNF732B4DXR9 585 aa10.13□□□□□ -0.79
CD44-209ENST00000433892 M0R036 132 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms