RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 OR5V1Q9UGF6 321 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 KCNS2Q9ULS6 477 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 ST3GAL6Q9Y274 331 aa10.24□□□□□ -0.77
USP40-205ENST00000430158 ATRQ13535 2644 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 A0A0G2JMP0 313 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 LOC100506127A0A0U1RQW1 187 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 A0A0X1KG70 313 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 FOXI3A8MTJ6 420 aaPredicted RBP10.23□□□□□ -0.77
USP40-205ENST00000430158 AIPO00170 330 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 SIRPB1O00241 398 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 PDCD5O14737 125 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 GEMIN2O14893 280 aaKnown RBP10.23□□□□□ -0.77
USP40-205ENST00000430158 DEGS1O15121 323 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 ENSAO43768 121 aaKnown RBP10.23□□□□□ -0.77
USP40-205ENST00000430158 AIREO43918 545 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 CSN2P05814 226 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 GTF2F2P13984 249 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 MGMTP16455 207 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 MYL9P24844 172 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 CAPZA1P52907 286 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 DLX6P56179 175 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 CLDN12P56749 244 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 PAX5Q02548 391 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 PLA2G7Q13093 441 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 P2RY14Q15391 338 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 RAB11BQ15907 218 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 TAF9Q16594 264 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 CTF1Q16619 201 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 FAM120AOSQ5T036 256 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 DCAF12L2Q5VW00 463 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 METAP1DQ6UB28 335 aaPredicted RBP10.23□□□□□ -0.77
USP40-205ENST00000430158 FIP1L1Q6UN15 594 aaKnown RBP10.23□□□□□ -0.77
USP40-205ENST00000430158 ANKRD13BQ86YJ7 626 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 OR4M2Q8NGB6 313 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 COQ2Q96H96 371 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 POM121Q96HA1 1249 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 TM2D1Q9BX74 207 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 SIRPDQ9H106 197 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 STEAP1Q9UHE8 339 aa10.23□□□□□ -0.77
USP40-205ENST00000430158 TRBV23-1A0A0A0MS06 115 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 A0A0A6YYD4 124 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 SMIM30A4D0T7 59 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A10PA6NDY2 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A18PA6NE21 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A16PA6NEW6 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A20PA6NIJ5 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A8PA6NJQ4 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A7PA6NKC0 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 NOTOA8MTQ0 251 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A22PA8MWA6 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A12PA8MX19 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A5PA8MXJ8 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A23PA8MXZ1 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 MGST3O14880 152 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 CSTBP04080 98 aaKnown RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 LIPFP07098 398 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A15PP0C7V4 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A13PP0C7W8 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A14PP0C7W9 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM90A24PP0C7X0 464 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 PPIAL4GP0DN37 164 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 SLC2A2P11168 524 aaPredicted RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 NDUFB7P17568 137 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 ERP29P30040 261 aaKnown RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 RPS27AP62979 156 aaKnown RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 MPV17LQ2QL34 196 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 TUSC1Q2TAM9 212 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 C2orf76Q3KRA6 126 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 TIMM50Q3ZCQ8 353 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 KLF17Q5JT82 389 aaPredicted RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 HES5Q5TA89 166 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 TMEM200BQ69YZ2 307 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAHD2BQ6P2I3 314 aaPredicted RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 OR2W3Q7Z3T1 314 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 LINC00596Q86U02 117 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM89BQ8N5H3 189 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 Q8N7P7 452 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 ASCC1Q8N9N2 400 aaKnown RBP10.22□□□□□ -0.77
USP40-205ENST00000430158 OR51D1Q8NGF3 324 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 OR5D13Q8NGL4 314 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 KCNG3Q8TAE7 436 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAM3DQ96BQ1 224 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 UPRTQ96BW1 309 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 FAHD2AQ96GK7 314 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 S100A13Q99584 98 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 CHST6Q9GZX3 395 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 C7orf69Q9H7B7 122 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 PCDHB16Q9NRJ7 776 aa10.22□□□□□ -0.77
USP40-205ENST00000430158 A0A0B4J203 849 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 TMEM272A0A1B0GTI8 110 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 CRLF1O75462 422 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 CRTAPO75718 401 aaPredicted RBP10.21□□□□□ -0.77
USP40-205ENST00000430158 GABARAPO95166 117 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 CGB3P0DN86 165 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 CGB7P0DN87 165 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 ZNF44P15621 663 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 ARSBP15848 533 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 GABRR1P24046 479 aa10.21□□□□□ -0.77
USP40-205ENST00000430158 RPS19P39019 145 aaKnown RBP10.21□□□□□ -0.77
USP40-205ENST00000430158 RPL5P46777 297 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms