RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 PEBP4Q96S96 227 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 CYTH2Q99418 400 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 TEAD3Q99594 435 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 SELENOSQ9BQE4 189 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 MARVELD1Q9BSK0 173 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 CHCHD7Q9BUK0 85 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 NUDT9Q9BW91 350 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 OSBPL11Q9BXB4 747 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 ULBP2Q9BZM5 246 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 NAA50Q9GZZ1 169 aaKnown RBP1.36□□□□□ -2.19
PTPRC-208ENST00000427110 NCOR1P1Q9H4R4 102 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 PLXNA4Q9HCM2 1894 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 BATF3Q9NR55 127 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 FGFR1OP2Q9NVK5 253 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 DDX18Q9NVP1 670 aaKnown RBP1.36□□□□□ -2.19
PTPRC-208ENST00000427110 PSME2Q9UL46 239 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 SIGLEC9Q9Y336 463 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 Q9Y3F1 56 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 LRRC42Q9Y546 428 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 S4R3C0 116 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 NRCAMQ92823 1304 aa1.36□□□□□ -2.19
PTPRC-208ENST00000427110 ZFC3H1O60293 1989 aaKnown RBP1.36□□□□□ -2.19
PTPRC-208ENST00000427110 HELZP42694 1942 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 PLXNB3Q9ULL4 1909 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 IGHV3-72A0A0B4J1Y9 119 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 A0A1B0GTQ1 180 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 A0A1B0GUH1 482 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SMIM23A6NLE4 172 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 K7EM74 188 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 M0QYV0 167 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 LGALS9O00182 355 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 MANBAO00462 879 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 COPEO14579 308 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 LIN7AO14910 233 aaPredicted RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CASC3O15234 703 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 ERI3O43414 337 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CCDC22O60826 627 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CTAG2O75638 210 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 APOEP02649 317 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 RPN2P04844 631 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CD5P06127 495 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 BPGMP07738 259 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SERPINA6P08185 405 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SNRPAP09012 282 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SFTPCP11686 197 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 GABRR2P28476 465 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 BMI1P35226 326 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 POLR2IP36954 125 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 MAGEA12P43365 314 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 RAP1GDS1P52306 607 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 GTF2A1P52655 376 aaPredicted RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 PSMD4P55036 377 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CLDN6P56747 220 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CLDN18P56856 261 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 ATP6V0D1P61421 351 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 BASP1P80723 227 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SARNPP82979 210 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 KDSRQ06136 332 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 TMED2Q15363 201 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 GOLGA7BQ2TAP0 167 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SLC25A35Q3KQZ1 300 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 HIKESHIQ53FT3 197 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 KLHL12Q53G59 568 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 PIP5KL1Q5T9C9 394 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 HHATQ5VTY9 493 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 NCBP2-AS2Q69YL0 99 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 THOC7Q6I9Y2 204 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 ULK3Q6PHR2 472 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CLEC20AQ6ZU45 233 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 FAM183BPQ6ZVS7 135 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 LRRC6Q86X45 466 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 C4orf33Q8N1A6 199 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 TMEM86AQ8N2M4 240 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 KIF2BQ8N4N8 673 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 DRAM1Q8N682 238 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 TMEM105Q8N8V8 129 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 OR4M1Q8NGD0 313 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 UBA3Q8TBC4 463 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 GLYATL2Q8WU03 294 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 FAM172AQ8WUF8 416 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 ING5Q8WYH8 240 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 PEX13Q92968 403 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 ISG20Q96AZ6 181 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 OPTNQ96CV9 577 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CPB2Q96IY4 423 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 KCNS1Q96KK3 526 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 QKIQ96PU8 341 aaKnown RBP eCLIP1.35□□□□□ -2.191e-6■■■■■ 33.2
PTPRC-208ENST00000427110 CSPG4P5Q96PW8 444 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 VAT1Q99536 393 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 EBNA1BP2Q99848 306 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SIKE1Q9BRV8 207 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 EMC6Q9BV81 110 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SNRNP25Q9BV90 132 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 SAMD10Q9BYL1 202 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 FAM96AQ9H5X1 160 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 CSNK1G1Q9HCP0 422 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 RPRD1BQ9NQG5 326 aaKnown RBP1.35□□□□□ -2.19
PTPRC-208ENST00000427110 DYRK4Q9NR20 520 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 TAS2R1Q9NYW7 299 aa1.35□□□□□ -2.19
PTPRC-208ENST00000427110 HMGXB4Q9UGU5 601 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms